PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011391.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 396aa    MW: 44675.9 Da    PI: 9.4772
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011391.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.2e-102452821954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +e+  LA+++gL+ +qV++WF N R +
  Pbr011391.1 245 FEHflHPYPSDSEKLMLAQQTGLSRTQVSNWFINSRVR 282
                  554459******************************88 PP
2BELL92.73.6e-30110180272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  r ++q+k ++L ++leeV+krYk y++q++ v++sFe++ glg+a+pY+slA k+i +hF cLk+ai +++
  Pbr011391.1 110 RVDVQMKNSRLTTMLEEVYKRYKLYCQQMESVVASFETIDGLGNAAPYISLAIKTILKHFGCLKNAILDKL 180
                  5689***************************************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-2964178IPR006563POX domain
PfamPF075264.5E-25108176IPR006563POX domain
PROSITE profilePS5007112.536223286IPR001356Homeobox domain
SMARTSM003892.1E-10226290IPR001356Homeobox domain
CDDcd000861.21E-10227287No hitNo description
Gene3DG3DSA:1.10.10.604.4E-27229290IPR009057Homeodomain-like
SuperFamilySSF466892.14E-17229292IPR009057Homeodomain-like
PfamPF059201.1E-17243282IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MADDGLEAFH VPQQSRRDKL RFTLQNHPPQ PPFSLPLFSE SRHYDGVSFR AGELRSSVPL  60
GPFTGYALIL KRSRFLKPAQ QLLEDFCGSV LPDSYPPPPN CWSFCAKDHR VDVQMKNSRL  120
TTMLEEVYKR YKLYCQQMES VVASFETIDG LGNAAPYISL AIKTILKHFG CLKNAILDKL  180
QSGGKTSLGD EETEGFSVIG LQNNQNPNDH LNLKLTTTNN LRQSVSRSQR GLPENAVVVL  240
RTWLFEHFLH PYPSDSEKLM LAQQTGLSRT QVSNWFINSR VRIWKPMVEE IHILETQQAQ  300
TIPDPMNKSV KAPLHPSAEN PVLHLGTPPM NSSSQKAQDI QTKRPRKIQH DLPKQSETWR  360
RNAANGSLTS NDLQRISKTT EIDEVSLALS LQARK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16232290563Homeobox protein Meis2
3k2a_B4e-16232290563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011391.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334759.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_009351281.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM85e-73BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A498JKQ30.0A0A498JKQ3_MALDO; Uncharacterized protein
STRINGXP_009334759.10.0(Pyrus x bretschneideri)
STRINGXP_009351281.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-74TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]