PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr011184.3

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 937aa MW: 105050 Da PI: 6.991

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr011184.3	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	109.1	2.8e-34	116	192	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C +d++e+k yhrrh+vC ++++a++v ++ +++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Pbr011184.3 116 RCQVPSCGVDIKELKGYHRRHRVCLACANASTVDIDCETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 192 6***********************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-25	110	178	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	28.231	114	191	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.12E-30	115	194	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-24	117	191	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:2.130.10.10	3.3E-6	879	931	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	3.11E-5	879	931	IPR017986	WD40-repeat-containing domain
SMART	SM00320	0.0026	888	927	IPR001680	WD40 repeat
PROSITE profile	PS50294	11.576	895	936	IPR017986	WD40-repeat-containing domain
PROSITE profile	PS50082	12.313	895	936	IPR001680	WD40 repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MEIQPPPPFD DTSTVWEWGD LFDFTVDDDL SISWGSAEKP DHEVGPAPED LLEDPNSNLS 60 RIRKRDPRLA CPNFLAGHIP CACPEIDAKM MELEEEEAGH GKKRVKTGRA PNGTARCQVP 120 SCGVDIKELK GYHRRHRVCL ACANASTVDI DCETKRYCQQ CGKFHVLSDF DEGKRSCRRK 180 LERHNNRRRR KPSDSKGASG KESQKENQTE ETNFDGGATE DCLQLSSQLN EKEELLESQG 240 GQTPILCSVP ESQNIHSDSG VSFMASGETQ MDARKHDSNN SLSPSNCDNK SYSSMCPTGR 300 ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV ELEGYIRPGC TILTIFIAMP KFMWMKLLED 360 PVSYLHEFVI VPEKMLSGRG NMLIYLNDMI FRFVKDGTSI IKTKVEVRAP RLHYVHPTFF 420 EAGKPMEFVA CGTVSCMQRS KLLSRKLPNK DHYGYRFLVS FSGKYLEYDY SPPSSHSQID 480 GDTTSNLDHQ FFQIQVPVTE SDCFGPAFIE IENESGLSNF IPVLIGDKEV CAEMKTIQKR 540 FDESLSLQGL HCSSRVSLSN SCEASSMRHT AFSDVILDIA WLLKKPLSEN FQQIMTASQI 600 QRFNYLLNFL ISIKSTTILD KVLQNLKSLM VNMELNSANN DSIDADMRLL QNYMEYARDL 660 LCKKFESSGV SVRESGRLVK KEDLVSQSQT CFQNDGKSVA PFHYQDTEIT VDGRLGVTVG 720 STSNERSETI PLLSKKAVGK ANFIKELPSV AKCCTSREIL RFRSSGMFLR FRPALFVISV 780 TAICAGLCAV LIHPHKVGEF ASGRVRFSSA DCCHVLSRYL PVNGPCGVDQ SRSPAYVSQF 840 SNDGLFFVAG FQVYASMTPV VNIVNVESSK TESLANDTVW DRRRLMTKGK AAGVLMGHLE 900 GVTFIDSQGD GHYLISNGKD QTTKLWDIRK MSSRAV*

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MEIQPPPPFD DTSTVWEWGD LFDFTVDDDL SISWGSAEKP DHEVGPAPED LLEDPNSNLS  60
RIRKRDPRLA CPNFLAGHIP CACPEIDAKM MELEEEEAGH GKKRVKTGRA PNGTARCQVP  120
SCGVDIKELK GYHRRHRVCL ACANASTVDI DCETKRYCQQ CGKFHVLSDF DEGKRSCRRK  180
LERHNNRRRR KPSDSKGASG KESQKENQTE ETNFDGGATE DCLQLSSQLN EKEELLESQG  240
GQTPILCSVP ESQNIHSDSG VSFMASGETQ MDARKHDSNN SLSPSNCDNK SYSSMCPTGR  300
ISFKLYDWNP AEFPRRLRHQ IFEWLASMPV ELEGYIRPGC TILTIFIAMP KFMWMKLLED  360
PVSYLHEFVI VPEKMLSGRG NMLIYLNDMI FRFVKDGTSI IKTKVEVRAP RLHYVHPTFF  420
EAGKPMEFVA CGTVSCMQRS KLLSRKLPNK DHYGYRFLVS FSGKYLEYDY SPPSSHSQID  480
GDTTSNLDHQ FFQIQVPVTE SDCFGPAFIE IENESGLSNF IPVLIGDKEV CAEMKTIQKR  540
FDESLSLQGL HCSSRVSLSN SCEASSMRHT AFSDVILDIA WLLKKPLSEN FQQIMTASQI  600
QRFNYLLNFL ISIKSTTILD KVLQNLKSLM VNMELNSANN DSIDADMRLL QNYMEYARDL  660
LCKKFESSGV SVRESGRLVK KEDLVSQSQT CFQNDGKSVA PFHYQDTEIT VDGRLGVTVG  720
STSNERSETI PLLSKKAVGK ANFIKELPSV AKCCTSREIL RFRSSGMFLR FRPALFVISV  780
TAICAGLCAV LIHPHKVGEF ASGRVRFSSA DCCHVLSRYL PVNGPCGVDQ SRSPAYVSQF  840
SNDGLFFVAG FQVYASMTPV VNIVNVESSK TESLANDTVW DRRRLMTKGK AAGVLMGHLE  900
GVTFIDSQGD GHYLISNGKD QTTKLWDIRK MSSRAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	1e-40	115	199	4	88	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	189	RRKLERHNNRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr011184.3

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	PAU82760	2e-56	U82760.1 Prunus armeniaca LEC14B homolog mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009369075.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7
TrEMBL	A0A498HR47	0.0	A0A498HR47_MALDO; Uncharacterized protein
STRING	XP_009369075.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6470	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.3	0.0	squamosa promoter binding protein-like 7