PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011113.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 740aa    MW: 81743.4 Da    PI: 6.1845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011113.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000275686051355
                  HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  Pbr011113.1 568 RQLIQDRIKELRELIPTgA------KCSIDSLLERTIKHMLFLQ 605
                  67799************77......7777779999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-325166IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.096555604IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-4568612IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MGTDLHNTLR SLCFNTEWNY AVSWKLKHRA RMVLTCEDAY FDNCEQHDSS VIRCFSKTLD  60
KLHDSHYSHD PLGLAVAKMS CHVYNLGEGI VGQVAVTGEH QWIYADDLVK NNCSPLQYCD  120
GWQSQFSAGI RTIVVVAVVP HGVIQLGSLN KVAENVKLIS QITDAFKTLQ DFPIDHIPNP  180
KQYSINSSTN ISLERLASGV LPDCVNNLDT ATNRESSDIW SSIFPHLGKD NDSSYISSLT  240
ENCLKEEVEL ANKHGGLESS NFRCVEIGKL PQSKSSALSM EHRKLVGVEL LDSRKCKGES  300
SGCKDTGMAS MIYAHPLSHD PVKDIVNLCD FADLPTTFLD STAHERINAD RADLHQNEVL  360
HVSEPSVVKF QKGLENLEFQ TESGHMDTSS ASMAFPAGCE LHEALGPAFL NQGNYFDWVA  420
GKNGDRITPE IPEGMNTSQL TSDSCQEHLL EAVVANVCQS GSLVKNEKSF CKSMQSLLTT  480
EKYPEPSGRI THTIDSENFS IDQPSLTGED MQQCLSSSGV CGVISPKWFS SPCPSACSEQ  540
PERSSGLSKN SKKRARPGQS SRPRPRDRQL IQDRIKELRE LIPTGAKCSI DSLLERTIKH  600
MLFLQSVTKH ADKLNKCADA KLCPKEASML GSSNYERGSS WAVEVGGNLK VCSIIVENLN  660
KNGQMVVELM CEECSHFLEI AEAIRCSGLT ILKGVTEARG DKTWICFVVE GQNNRSIHRM  720
DILWSLVQIL QPKNPTQQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011113.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369499.10.0PREDICTED: transcription factor bHLH155-like
TrEMBLW0UTD70.0W0UTD7_MALDO; Uncharacterized protein
STRINGXP_009369499.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-178conserved peptide upstream open reading frame 7