PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28351.7 Da PI: 6.3116 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 106 | 155 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + + r++lg+f++ae Aa a+++a+ +l+g Pbr011102.1 106 YRGVRRRP-WGKYAAEIRDSTR---HgIRVWLGTFDSAEAAALAYDQAAFALRG 155 9*******.**********422...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.6E-36 | 105 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 105 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-22 | 105 | 164 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 105 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.90E-21 | 106 | 165 | No hit | No description |
Pfam | PF00847 | 1.2E-12 | 106 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEMESAFFHF SSPDFSSDSS FGSLHSFSWG DESLLLPFNS HELMNFPPFN INDSQDMLLY 60 DVVARGAKQT LVAQNEANSF NGVKEQEVTS ANNQTLEEKS TKEKAYRGVR RRPWGKYAAE 120 IRDSTRHGIR VWLGTFDSAE AAALAYDQAA FALRGSLAVL NFPAQVVQDS LQEIKYRHDE 180 ACSPVIALKR RHSMKRKSMH KKGNKPSQCT DQRKVQEVLP QNVMVLEDLG VEYLEELLDI 240 SSCGSNHWSP Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-27 | 106 | 163 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011102.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369492.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 7e-69 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A498IVL4 | 1e-155 | A0A498IVL4_MALDO; Uncharacterized protein | ||||
STRING | XP_009369492.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 5e-56 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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