PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010978.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 14759.5 Da PI: 4.6986 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.5 | 4.6e-19 | 1 | 56 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++e Pbr010978.1 1 MLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRDE 56 67899**********************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.611 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-17 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MLMEVPETQR ADAANSLVYE ANVRLRDPVY GCMGAISALQ QQVQSLQAEL NAVRDEILKY 60 KYREANLLPS NSHHMALFST SGAVSAASLP QTPQPTPPPP PPPPMPPTSS SSSMYTNQQT 120 SAADYSSLSS ENVSFFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 1 | 70 | 55 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 1 | 70 | 55 | 124 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010978.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369256.1 | 3e-94 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 1e-31 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A498JI09 | 3e-90 | A0A498JI09_MALDO; Uncharacterized protein | ||||
STRING | XP_009369256.1 | 1e-93 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-31 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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