PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010928.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 19336.8 Da PI: 7.94 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.5 | 7e-41 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C++ C++apyf ++++kkfa vhk+FGasnv+k+l+++pe++red+++sl+yeAear+rdPvyG++g i+ lq+++ ql+++la+++ Pbr010928.1 12 SCAACKTLKRRCSPTCIFAPYFHSDDAKKFAQVHKVFGASNVSKILTEVPEDQREDTVNSLAYEAEARLRDPVYGCIGAISMLQRKMIQLQHDLAVAR 109 6**********************************************************************************************998 PP DUF260 99 ee 100 ++ Pbr010928.1 110 AR 111 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.416 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-40 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKGSHEPRSS SSCAACKTLK RRCSPTCIFA PYFHSDDAKK FAQVHKVFGA SNVSKILTEV 60 PEDQREDTVN SLAYEAEARL RDPVYGCIGA ISMLQRKMIQ LQHDLAVARA RLACYAPKNS 120 PSLSSCSSSC CAMLDEATFS GFPAWSGLNS NNFSQNSSDL ISQHGQASDF SYSSYIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010928.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369196.1 | 1e-130 | PREDICTED: LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 9e-64 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A498JIK5 | 1e-115 | A0A498JIK5_MALDO; Uncharacterized protein | ||||
STRING | XP_009369196.1 | 1e-129 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-64 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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