PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010912.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 649aa    MW: 71073 Da    PI: 7.2566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010912.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07252272526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  Pbr010912.1 252 PCPEFRK-GSCQKGDACEYAHG 272
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.0E-158155IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-1511131IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.88454134IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.795478IPR002110Ankyrin repeat
SMARTSM002480.0025484IPR002110Ankyrin repeat
PfamPF127962.7E-954121IPR020683Ankyrin repeat-containing domain
CDDcd002044.52E-1556174No hitNo description
SMARTSM002480.002289121IPR002110Ankyrin repeat
PROSITE profilePS5008810.41989124IPR002110Ankyrin repeat
PROSITE profilePS5010313.244247274IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5247273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4252274IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5252272IPR000571Zinc finger, CCCH-type
SMARTSM0035618282305IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.216282306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MESEFQKQKS VLVELSASDN LDAFRTEVEE KGFHVDEAGF WYGRRIGSKQ MGFEERTPLM  60
IAAMFGSTKV LKYIIESGMV DVNRSCGSDR VTALHCAAAG GSTASLEVVK LLLDASADAN  120
CVNAYGNMPV DLIAPALKSP CSSRRKAMEM LLRGDKSVME SDQIAIEEGD QQKVSSPQMP  180
KEGSDKKEYP IDISLPDINN GIYGTDEFRM FTFKVKPCSR AYSHDWTECP FVHPGENARR  240
RDPKKYPYSC VPCPEFRKGS CQKGDACEYA HGVFESWLHP AQYRTRLCKD ETGCTRKVCF  300
FAHRPEELRP VYASTGSAMP SPRSMSVSAA DMATLSPLAL GSSAMSMPIT STPPMSPLAA  360
ASSPKNGGLW QNKVNLTPPT LQLPGSRLKS ACSARDLELE MELLGLDSHS SQQQQLWDEI  420
SRLSSSPSFS RLGELKPTNL EDAFGSVDPS LLSQLQGHSQ KPSAPTHRQN MNQLRSSYPT  480
NLSSSPVRKP SSFGLDSPSA LAAAVMNSRS AAFAQQRSQS FIDRGAMNHL SGLNAPVNSS  540
TMRQSSDWGS PGGKLDWGMQ GDELNKLKKS ASFGFRSNNA GTPPGFKPSA VDEPDVSWVN  600
SLVKDVSSER SELYGADNKQ RYRRLNNGAH EMLPSWAEQM YIEQEQRA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010912.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369177.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_018505749.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A498JLI60.0A0A498JLI6_MALDO; Uncharacterized protein
STRINGXP_009369177.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein