PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRAS | ||||||||
Protein Properties | Length: 654aa MW: 71128.8 Da PI: 6.9403 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 340.3 | 3.4e-104 | 283 | 653 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++ L+e+A+a+s+g+ e+a ++Lar+ + +p+ ++ qRl ++ AL++r++ + ++ p++e +e+ + +l++e+sP++k+++++ Pbr010864.1 283 KQSLMEAATAISEGKSEAAAEILARMMATqvPNPRPNSEQRLLEFLGLALKSRVNP----IDNSPPANELF---GQEHSGSIQLLYELSPCFKLGFMA 373 578**********************998854666779******************9....44433433333...9999******************** PP GRAS 98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 aN+aIlea+ ++ ++vH+iDfdi++G+Q++ L+qaL++R+ p+ ++iT+v++ +g + +l+ ++++L++ Ae+lgv++efnv v++++ +l+ Pbr010864.1 374 ANSAILEATLTDqsatNKVHVIDFDIGHGGQYMLLFQALSTRQyVLPAVVKITTVAD--NGGEGRLRMVRQKLSQAAERLGVRLEFNV-VSQKIGELN 468 ********9777678899*************************555669********..77**************************9.7******** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 ++L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+ r+k E++ Pbr010864.1 469 RDSLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFMARVNECCAYYGALLESIEATVPRENPGRVKAEEA 566 ************************************************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+r++vn vaceg++r++r+e ++kWr+r+++aGF+ p++ ++++ k l+ + + g++v+ee+g +++gW +r+L+++SaWr Pbr010864.1 567 -LSRKLVNSVACEGRDRVQRCEVFGKWRARMGMAGFELRPMGPNMTELLKNRLESGNraNSGFTVKEENGGVCFGWISRTLTVASAWR 653 .************************************************9999987667899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.682 | 256 | 631 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-101 | 283 | 653 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MQSGGFNGGG GGGGVPDFYT NGRSISISAA MNGHNPSQNN PYHRSQLPSM FMDPTASQIA 60 RQTQFQPQTQ NPAAGLIGKR TLAEFQAHQQ NHYNPHQNYH QNPGQNLYLR SLKPRTFQHS 120 SPISPLSPID FSSGSAITGS DSSSSSSSIL SHQRFGLPLL HQLRPQPINQ TAPPAMSYVN 180 NLVPNNPVQN NPVQTRGLDS EKKMISNTLQ ELEKQLLDDN DEDDEGDAVS VITKTNSEWS 240 ETIQNLMGSA APSQCQKPIS PSPTSSSSSS SSVASPASST CSKQSLMEAA TAISEGKSEA 300 AAEILARMMA TQVPNPRPNS EQRLLEFLGL ALKSRVNPID NSPPANELFG QEHSGSIQLL 360 YELSPCFKLG FMAANSAILE ATLTDQSATN KVHVIDFDIG HGGQYMLLFQ ALSTRQYVLP 420 AVVKITTVAD NGGEGRLRMV RQKLSQAAER LGVRLEFNVV SQKIGELNRD SLGCEPDEPI 480 AVNFAFKLYS MPDESVSTDN PRDELLRRVK GLAPRVVTLV EQEMNTNTAP FMARVNECCA 540 YYGALLESIE ATVPRENPGR VKAEEALSRK LVNSVACEGR DRVQRCEVFG KWRARMGMAG 600 FELRPMGPNM TELLKNRLES GNRANSGFTV KEENGGVCFG WISRTLTVAS AWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-40 | 284 | 653 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010864.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009368748.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 1e-177 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A498JNF6 | 0.0 | A0A498JNF6_MALDO; Uncharacterized protein | ||||
STRING | XP_009368748.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6266 | 31 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-160 | SCARECROW-like 8 |