PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr010763.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Protein Properties

Length: 354aa MW: 40236.4 Da PI: 8.6795

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010763.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.6	5.1e-14	267	342	17	97
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 ++p kf+++h ++++ +ltl ++gr+W v+l y++ ++r++ +GW+ F ++n+Lk D++vF l+++ + f v ++ Pbr010763.1 267 CVPYKFVKTHLADHPS--DLTLCVSDGRTWPVNLVYERPKDRFI--GGWSAFRQDNDLKLDDVCVFVLVNKvELF--EVAFY 342 78******666545..79999999******99999954..7******************99865555..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.4E-6	261	345	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.71E-17	266	343	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-11	267	341	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.4E-16	267	340	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.60E-15	268	343	No hit	No description
PROSITE profile	PS50863	11.716	268	345	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQSAFYTASS SHQFQLPWKI NETQFAAQRP VPNKLKTCFK APTFTNSLRT SIGYEPEESL 60 GKEPVPARPG RLPVVIRRSG RVSRYFWDGN CLQLVGVDGG AASFSFNFDD GFRKLYRICS 120 LAVRDFFIPK QVSGSYMDYV KWKFLHRVFS SALQVLATQD RLEILLNNWI ELGYVPAPAE 180 VSKEEGIDFL RSKDKGLWPI RIGYLDPKNQ IPELSMMAMQ STSADDYYFI SMEILYTRIR 240 RTKQAGILLC LREGAGTADV IMGLLQCVPY KFVKTHLADH PSDLTLCVSD GRTWPVNLVY 300 ERPKDRFIGG WSAFRQDNDL KLDDVCVFVL VNKVELFEVA FYRKPEAANI CAL*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQSAFYTASS SHQFQLPWKI NETQFAAQRP VPNKLKTCFK APTFTNSLRT SIGYEPEESL  60
GKEPVPARPG RLPVVIRRSG RVSRYFWDGN CLQLVGVDGG AASFSFNFDD GFRKLYRICS  120
LAVRDFFIPK QVSGSYMDYV KWKFLHRVFS SALQVLATQD RLEILLNNWI ELGYVPAPAE  180
VSKEEGIDFL RSKDKGLWPI RIGYLDPKNQ IPELSMMAMQ STSADDYYFI SMEILYTRIR  240
RTKQAGILLC LREGAGTADV IMGLLQCVPY KFVKTHLADH PSDLTLCVSD GRTWPVNLVY  300
ERPKDRFIGG WSAFRQDNDL KLDDVCVFVL VNKVELFEVA FYRKPEAANI CAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010763.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009366125.1	1e-110	PREDICTED: protein root UVB sensitive 4
Swissprot	Q67YT8	2e-35	RUS4_ARATH; Protein root UVB sensitive 4
TrEMBL	A0A498KFY1	1e-106	A0A498KFY1_MALDO; Uncharacterized protein
STRING	XP_009366125.1	1e-109	(Pyrus x bretschneideri)

Publications ? help Back to Top
Leasure CD, et al. ROOT UV-B SENSITIVE2 acts with ROOT UV-B SENSITIVE1 in a root ultraviolet B-sensing pathway. Plant Physiol., 2009. 150(4): p. 1902-15 [PMID:19515790] Li WC,Zhao SQ [Specific gene silencing of At1g13770 and At2g23470 by artificial mi-croRNAs in Arabidopsis]. Yi Chuan, 2012. 34(3): p. 348-55 [PMID:22425954]