PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010599.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 573aa    MW: 64010.8 Da    PI: 7.5547
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010599.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.4e-0785106426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C f++  G+C+ Gd+C+F H+
  Pbr010599.1  85 VPCYFYSN-GFCNKGDKCSFLHD 106
                  69**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.9E-11761No hitNo description
PROSITE profilePS501039.976735IPR000571Zinc finger, CCCH-type
SMARTSM003560.0093734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5593763IPR000571Zinc finger, CCCH-type
SMARTSM003560.333962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-681106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.79881108IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-582107IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-585106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-586107IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MEEELVKRNT DCVYFLASPL TCKKGIDCEF RHSKIARLNP KECWYWLAGN CLNPTCAFRH  60
PPLDGHGGAP SESSPPSVTS NKTSVPCYFY SNGFCNKGDK CSFLHDTDGN ASNGKSSKTA  120
SACNEALALT SENEAAAGNG ALARISESKA PAGNEALART SENKAPAGNE ALALNSETKA  180
SVGNDTMSAP RITHLNPSET ASKATVGTRF QHKENLSYFE QRVQRDFPQK SVCTQISMSG  240
DEEAGENRSD SLPEDSSIRS KSHSWTDQSS EDEDDDLVPE ERWESSPGFD VLVDGKSDNL  300
GCDDDQEYFP TLHGEHRALN SRFLGHDFEN PDEYVPEYPD AKLLHDRDMY NDCLDTRIIF  360
GNHGPNPVYT KERMSDSMFS SKRKHMPREL FDGDEDFLDL RDRLRRRRVT DGRSINGLSR  420
RHESLGLFGR PQRHGLGRRL HRRLASVMGN NTYESPRGNG AFSNGGIQRG SLRHAQEYRS  480
RKKHHKERRP AEQQFPWSEI SKKPFPREKR CAGQPTSFTG PKSLAQIREE KRKAEENGGS  540
IGIPKRARRT TVDFQGPKPL NEILKEKGKI PD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401407DRLRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010599.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368821.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A498HUL90.0A0A498HUL9_MALDO; Uncharacterized protein
STRINGXP_009368821.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823