PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010534.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 662aa    MW: 73920.5 Da    PI: 5.9446
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010534.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.54.3e-2963146186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++qe+laL+++r+em+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++  t+++fdql+
  Pbr010534.1  63 RWPRQETLALLRIRSEMDVAFRDASVKGPLWEEVSSKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLN 146
                  8********************************************************************975544..6******97 PP
2trihelix100.61.3e-31452536186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+k ev+aLi++r++++++++++  k+plWee+s  mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ l+
  Pbr010534.1 452 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHLLD 536
                  8********************************************************************97.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.8E-460122IPR001005SANT/Myb domain
PfamPF138371.2E-1862148No hitNo description
PROSITE profilePS500906.93462120IPR017877Myb-like domain
CDDcd122039.41E-2462127No hitNo description
SMARTSM007170.0041449511IPR001005SANT/Myb domain
CDDcd122032.18E-28451516No hitNo description
PfamPF138372.3E-21451538No hitNo description
PROSITE profilePS500906.98451509IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MLGESTSVLG SSIGRDAAAA AVAAPEGGGG SGDGSNNNSG EETFRGGQEE LLGGGERSFG  60
GNRWPRQETL ALLRIRSEMD VAFRDASVKG PLWEEVSSKL AALGYHRSAK KCKEKFENVY  120
KYHRRTKEGR TGKSEGKTYR FFDQLNALEN QPPTPGNTTT HHQPKPHQST TVAAAATMTT  180
MAMANPPPTI SHLNSSTTVP SSAAPHPTIP TVSSQGIATP TLNNLTLPSS FPPTNPIVLP  240
PPPQPPPPQP TTTNPTSNLS YHHQQQHTAF PTIPTDLLSN SASSSTSSDE ELEGRAKKKR  300
KWKDFFERLM KDVIQKQEDL QKRFLETIEK REQERIVREE AWRMQEIARI NREHEILAQE  360
RSIKAAKDAA VMSFLQKVSE QHQNQNQNKN QSTPNQSQQL PLQPAPLPLP LRQPAPPPQA  420
QPQQKVTTFD IVPKSNNNGE NDNLMMPPSS SRWPKVEVQA LIKLRTSLDS KYQENGPKGP  480
LWEEISGGMR KLGYNRNAKR CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHLLDSLYR  540
ERNNFDQNNV NSTSTTNSSS QFKPENSVPL MVRPEQQWPP EPPPHQQQDH QGLMMGTDHH  600
QNQGEDHHDQ QDKENNIGDD DDDEEDEEEE DEEEDDDDDE GDGNYEIVAN KPASVGAATA  660
E*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3976460.0JQ397646.1 Malus zumi GTL mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368512.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-146TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A498K1G70.0A0A498K1G7_MALDO; Uncharacterized protein
STRINGXP_009368512.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-96Trihelix family protein