PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 299aa MW: 33319.9 Da PI: 7.9127 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 105.4 | 3e-33 | 50 | 150 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k ltpsdv+k++rlv+pk++ae++ gg+ ++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ + ++ +l++ Pbr010410.1 50 FEKPLTPSDVGKLNRLVIPKQHAERYfplgGGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERLRAHTDRLFI 145 99***************************7666..6679************************************************99888899*** PP EEE-S CS B3 95 kvfrk 99 +++r+ Pbr010410.1 146 GWRRR 150 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 43 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-32 | 45 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.92E-29 | 48 | 140 | No hit | No description |
PROSITE profile | PS50863 | 14.748 | 50 | 151 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-30 | 50 | 151 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-27 | 50 | 151 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MSPTHFHTPT TTFNFNLNHH DAIDPNESDQ LQPPPPHPRI DSYDEKEPMF EKPLTPSDVG 60 KLNRLVIPKQ HAERYFPLGG GDSGLLLSFE DESGKSWRFR YSYWNSSQSY VLTKGWSRYV 120 KEKRLDAGDV VLFERLRAHT DRLFIGWRRR NAVPAHDSGA QVSRVGVESS SGGGGGWTRM 180 LYSAPHHGLS YPAHQHRHSV APYPPDCLHA AGSDVQNMNQ TTSVGNSKVL RLFGVNLECQ 240 QQAVEHHESE PSTPDGSSSS LSMSSQGPTH GQQQLYAPAA YNYADQHRVR KPPKLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-49 | 45 | 153 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-49 | 45 | 153 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010410.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726963 | 7e-47 | KJ726963.1 Zea mays clone pUT3663 ABI3VP1 transcription factor (ABI2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349414.1 | 0.0 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Refseq | XP_009349652.1 | 0.0 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q8GYJ2 | 1e-66 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A498IIZ4 | 1e-170 | A0A498IIZ4_MALDO; Uncharacterized protein | ||||
STRING | XP_009349414.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009349652.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 2e-56 | B3 family protein |
Publications ? help Back to Top | |||
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