PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010333.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 711aa    MW: 77893.3 Da    PI: 7.1305
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010333.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094064431954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Pbr010333.1 406 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 443
                  554459******************************88 PP
2BELL119.91.1e-38270341172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqe+q+kk kL+++l+eVd+rY+qy+ q+++vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Pbr010333.1 270 ERQEIQMKKGKLINMLDEVDQRYRQYHRQMHVVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 341
                  79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.4E-63196339IPR006563POX domain
PfamPF075261.8E-49201338IPR006563POX domain
PROSITE profilePS5007112.195384447IPR001356Homeobox domain
CDDcd000865.20E-12387448No hitNo description
SMARTSM003895.3E-9387451IPR001356Homeobox domain
SuperFamilySSF466898.98E-17388453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28390453IPR009057Homeodomain-like
PfamPF059202.9E-18404443IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MAAYFHHHGG NSSEIQASSD GALQTLVLMN PGYVQYSDTP PPPQQQQQQQ QPQPPSAATN  60
LVFLNSAPNS LTHHPSTLSH APPSHHQQFL GIPLTQDPNG NSSLSMHHPH NDISALHAFM  120
PRIQTQYALW NSIDPAASTR DTPRSQQGLS LSLSSQQPGF GSFQETSAER EVPSGEDIRV  180
SSGSNSSASG VTNGVSGMQS VLLSSKYLKA AQELLDEVVN VGNGMRTELP KKGNGQQSKA  240
AAESSMAEAR DGSVGGEGNG KRAAELSTAE RQEIQMKKGK LINMLDEVDQ RYRQYHRQMH  300
VVISSFEQAA GIGSARTYTA LALQTISKQF RCLKDAITNQ IRSANKSLGE EDSVGGKIEG  360
SRLKYVDHQL RQQRALQQLG MVQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH  420
MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEAKEQ EKNGSSEKMS KSNEDSASKS  480
TAPQDTENQT TSTFNSKQEN SVNHNVATHP SMSISTPSTS PTNMVRNQSG FTLIGSSELD  540
GITQGSPKKP RSTEIMHSSN STVPCMNMES QEVSNEQVSM KFGDERQGRD GYSFMGGQTN  600
FIGNFGQYPI GEIGRFDADQ FTPRFSGNGV SLTLGLPHCE NLSLSGAHHH QTFLPNQNIQ  660
LGRRVDIGET NDQFGAINTS APHSSAAAFE NIDIQNRKRF VAQLLPDFVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16393451563Homeobox protein Meis2
3k2a_B5e-16393451563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348973.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_009348980.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_009348985.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_018501298.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_018501302.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A498I2D60.0A0A498I2D6_MALDO; Uncharacterized protein
STRINGXP_009348973.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-169BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]