PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010330.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 283aa    MW: 31488.5 Da    PI: 7.2648
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010330.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof95.63.5e-301873762
       zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +cpr   +ntkfCyynnysl+qPryfCk+ rryWtkGG+lrnvPv gg+r+n+++s
  Pbr010330.1 18 NCPRYGCSNTKFCYYNNYSLTQPRYFCKGYRRYWTKGGSLRNVPVRGGCRENRRRS 73
                 8***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-201469IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.4841771IPR003851Zinc finger, Dof-type
PfamPF027013.2E-241871IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERAGWKLND DHHHISPNCP RYGCSNTKFC YYNNYSLTQP RYFCKGYRRY WTKGGSLRNV  60
PVRGGCRENR RRSKSLRLST ITTTTTQGHA QHNANKSSAN TYEGAHNSYG TNVLGDSTSS  120
SMTQDGSHID LALIYANFLN QKLDNSDSTT TSDRQLPELP SEFNPAAVDF SSMAFNMNNA  180
SSDNTSTQLM GDLHHQNGLV GSLGCHTTLS QYHFSTENCS INDCMYFGGL DPLIHHPEKH  240
RHHQDTSEVV QYASDFGLPP LPGQNALWST TSQMMDSGSH TM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010330.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349937.10.0PREDICTED: dof zinc finger protein DOF3.5-like
SwissprotQ9SVC56e-34DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A498I2Z11e-165A0A498I2Z1_MALDO; Uncharacterized protein
STRINGXP_009349937.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-34Dof family protein