PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010247.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 512aa    MW: 55617.2 Da    PI: 7.6076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010247.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-10134158226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++ t tCk+G++CkF H+
  Pbr010247.1 134 GEKDCAHYMLTRTCKFGESCKFDHP 158
                  7889********************8 PP
2zf-CCCH277.9e-09199223327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   + C++f +t  Ck+G rCkF+H++
  Pbr010247.1 199 APDCPYFIKTQRCKFGMRCKFNHPK 223
                  589********************96 PP
3zf-CCCH36.86.6e-12246270327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C f+++tG+Ck+G +CkF+H++
  Pbr010247.1 246 EPPCAFYLKTGQCKFGVTCKFHHPK 270
                  79*********************96 PP
4zf-CCCH38.42.1e-12320345126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+f+++tG CkyG++C+++H+
  Pbr010247.1 320 PGEPDCPFYLKTGSCKYGATCRYNHP 345
                  5789*********************9 PP
5zf-CCCH37.63.6e-12404425526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+++++tG+Ck+G+ CkF+H+
  Pbr010247.1 404 ECDYYMKTGECKFGELCKFHHP 425
                  7********************8 PP
6zf-CCCH40.54.6e-13458483227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  + ++C ++++tGtCkyG++CkF H+p
  Pbr010247.1 458 GVAICVYYLKTGTCKYGASCKFDHPP 483
                  5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0034132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263132160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5133159IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8134158IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117196224IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5199223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5201225IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-6243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46243271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5246271IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9246270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5248269IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892319347IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10321345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5324346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4325344IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5399426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619399427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6400427IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10404425IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4405425IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-8456483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873456484IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10458483IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6459483IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-6461481IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSSHLYGFGA AAQSATSAAT AAALSSVYSS RALTDSYLSD PALRYYSGSD PFADHHTRAS  60
SMYLPPHLIP HSAWPAPDVE PGVPGVKRPS EALYHQSYMG AYNTIGQEAW YAALAKRPRY  120
EGASTLPIYP QRPGEKDCAH YMLTRTCKFG ESCKFDHPIW VPEGGIPDWK EEDLSAKLLH  180
LEKVPLVAPT EVLPERPGAP DCPYFIKTQR CKFGMRCKFN HPKDKVIASD ASENADVFTL  240
PERPSEPPCA FYLKTGQCKF GVTCKFHHPK DIQIPSANQE NKAGETDTAI KTEGTGFSVK  300
APISFTPALL YNTKELPVRP GEPDCPFYLK TGSCKYGATC RYNHPDRYAI NPPIAAISHP  360
IVATQAAGLN IGVIDPAASI YQTLAQPTVG VGPTVYPQRI GQIECDYYMK TGECKFGELC  420
KFHHPIDRSV VALSTPKAVP VQEANVKLTL AGLPRREGVA ICVYYLKTGT CKYGASCKFD  480
HPPPGEVMGM GATQGTSSGE AKAGEFPQEQ Q*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010247.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4540004e-62AM454000.1 Vitis vinifera contig VV78X082437.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368594.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A498IWQ40.0A0A498IWQ4_MALDO; Uncharacterized protein
STRINGXP_009368594.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)