PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr010171.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 648aa MW: 71993.1 Da PI: 5.5031

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr010171.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.8	9.3e-21	1	69	17	87
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++lea Pbr010171.1 1 MDVAFRDATLKGPLWEDVSRKLAELGYQRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 69 567899**********************************************866665..****985 PP
2	trihelix	107	1.3e-33	397	482	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Pbr010171.1 397 RWPKAEVLALIKLRSGLESRYQDAGPKGPLWEEISAGMGRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 482 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.20E-16	1	49	No hit	No description
Pfam	PF13837	2.8E-15	5	70	No hit	No description
PROSITE profile	PS50090	4.623	15	42	IPR017877	Myb-like domain
PROSITE profile	PS50090	7.306	390	454	IPR017877	Myb-like domain
SMART	SM00717	7.3E-4	394	456	IPR001005	SANT/Myb domain
Pfam	PF13837	4.1E-23	396	483	No hit	No description
CDD	cd12203	2.68E-29	397	461	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MDVAFRDATL KGPLWEDVSR KLAELGYQRN AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS 60 YKFFSELEAL HGTAATAAAT TANVLASPAV HVASPNPVSV GFGSVSNPMP ISSFRMPQQQ 120 QPPPATVIPI IPSSQPTATP MDFNFSSNSS STSPGTDDED DDDDVEGERS SRKRKRGSAS 180 TSTGISGGGS TRKMMNFFEV LMKQVMQKQE SMQQRFLEVI EKREQDRTIR EEAWKRQEMA 240 RLTREQELMS QERAISASRD AAIISFLQKI TGQTIQLPPP VNVQAAPPPP VPPSVSVVTP 300 LPQTTPQPTT QTYQTPQQQQ PQPPQQMQQV RHVQQPQNVQ QQQPQPPQQM QQVRHVQQPQ 360 NVQPVMAVPE QQVPPTAQEN IASGGGGGSS EPASSSRWPK AEVLALIKLR SGLESRYQDA 420 GPKGPLWEEI SAGMGRMGYN RSSKRCKEKW ENINKYFKKV KESNKKRPED AKTCPYFHEL 480 DALYRKRVLG GGSTGGSSSS LGNMLEQQPQ QEQVVAASEN KNADDSTNVE TNLRANLFGE 540 GTEEAAKKPE DIVKELMKVH DHQQVLQQGH PQHFGVDDCN RMEEADSDNL MDQEEEDMED 600 EDMDEEDDEE TEQERKMAYK IEFQKQNTGP SSNGGGNGAP SFLAMVQ*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MDVAFRDATL KGPLWEDVSR KLAELGYQRN AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS  60
YKFFSELEAL HGTAATAAAT TANVLASPAV HVASPNPVSV GFGSVSNPMP ISSFRMPQQQ  120
QPPPATVIPI IPSSQPTATP MDFNFSSNSS STSPGTDDED DDDDVEGERS SRKRKRGSAS  180
TSTGISGGGS TRKMMNFFEV LMKQVMQKQE SMQQRFLEVI EKREQDRTIR EEAWKRQEMA  240
RLTREQELMS QERAISASRD AAIISFLQKI TGQTIQLPPP VNVQAAPPPP VPPSVSVVTP  300
LPQTTPQPTT QTYQTPQQQQ PQPPQQMQQV RHVQQPQNVQ QQQPQPPQQM QQVRHVQQPQ  360
NVQPVMAVPE QQVPPTAQEN IASGGGGGSS EPASSSRWPK AEVLALIKLR SGLESRYQDA  420
GPKGPLWEEI SAGMGRMGYN RSSKRCKEKW ENINKYFKKV KESNKKRPED AKTCPYFHEL  480
DALYRKRVLG GGSTGGSSSS LGNMLEQQPQ QEQVVAASEN KNADDSTNVE TNLRANLFGE  540
GTEEAAKKPE DIVKELMKVH DHQQVLQQGH PQHFGVDDCN RMEEADSDNL MDQEEEDMED  600
EDMDEEDDEE TEQERKMAYK IEFQKQNTGP SSNGGGNGAP SFLAMVQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr010171.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354426	2e-45	AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBank	AK361507	2e-45	AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBank	AK372713	2e-45	AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009373707.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
Swissprot	Q39117	8e-58	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A498I6X3	0.0	A0A498I6X3_MALDO; Uncharacterized protein
STRING	XP_009373707.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-47	Trihelix family protein