PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010143.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LFY
Protein Properties Length: 434aa    MW: 48258.6 Da    PI: 8.1445
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010143.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY611.12.2e-186344191386
      FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklr........eleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90 
                  mdp+afsa+lfkw  r ++  p++r++ eaav++a+ +aaaaaa ++lr        +le+lf+ayGvry+t+akiaelGftv+tL+dmkd+eldd+m
  Pbr010143.1  34 MDPDAFSANLFKWGLRGMV-VPTNRVQLEAAVPPAA-AAAAAAAGCTLRppgelgfgGLEDLFQAYGVRYYTAAKIAELGFTVKTLLDMKDDELDDMM 129
                  9*************99776.6788999999887777.66667777778889999999***************************************** PP

      FLO_LFY  91 kslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkka 188
                  +sls+ifr++llvGeryGikaavraerrrl+ee+  ++rr+ +s d      +l  + lseepvq+eke++gsgg+   ++e+++a e++++++++k+
  Pbr010143.1 130 SSLSQIFRWELLVGERYGIKAAVRAERRRLDEED--SRRRNPVSGD------TLVYNWLSEEPVQQEKEMVGSGGGA--TWEVATAGERRKKQRRMKK 217
                  ********************************88..7777556555......688999***************9998..8888888875555555555 PP

      FLO_LFY 189 skkkqkrkkkkelkse.ededeeeeededeegsgedge...erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvt 282
                   + k+     +++++  +ded+++ +d  + g+g +g    erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvt
  Pbr010143.1 218 GQFKNCSAGGRHNNEGvDDEDDNDMDDMTGYGNGGGGGmlgERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVT 315
                  44444444333333332556666666666666555554577********************************************************* PP

      FLO_LFY 283 nqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChl 380
                  nqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaa qgwdida+fn+hprLsiWYvPtkLrqLCh+
  Pbr010143.1 316 NQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAAGQGWDIDAIFNSHPRLSIWYVPTKLRQLCHA 413
                  ************************************************************************************************** PP

      FLO_LFY 381 erskas 386
                  er++a+
  Pbr010143.1 414 ERNNAT 419
                  ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.9E-19134418IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNKNRLAFMG TEHYKLPQKI VSVHIVLCGV VENMDPDAFS ANLFKWGLRG MVVPTNRVQL  60
EAAVPPAAAA AAAAAGCTLR PPGELGFGGL EDLFQAYGVR YYTAAKIAEL GFTVKTLLDM  120
KDDELDDMMS SLSQIFRWEL LVGERYGIKA AVRAERRRLD EEDSRRRNPV SGDTLVYNWL  180
SEEPVQQEKE MVGSGGGATW EVATAGERRK KQRRMKKGQF KNCSAGGRHN NEGVDDEDDN  240
DMDDMTGYGN GGGGGMLGER QREHPFIVTE PGEVARGKKN GLDYLFHLYE QCRDFLIQVQ  300
NIAKERGEKC PTKVTNQVFR YAKKAGASYI NKPKMRHYVH CYALHCLDEE ASNALRRAFK  360
ERGENVGAWR QACYKPLVAI AAGQGWDIDA IFNSHPRLSI WYVPTKLRQL CHAERNNATA  420
SSSASGGGDH LPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092594284173PROTEIN LEAFY
2vy2_A1e-1092594284173PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1620360.0AB162036.1 Pyrus communis PcLFY-2 mRNA for LEAFY protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506770.10.0PREDICTED: floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLQ5KTE20.0Q5KTE2_CYDOB; LEAFY protein
STRINGXP_009373656.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-107floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]