PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009953.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 364aa    MW: 41473.1 Da    PI: 5.2436
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009953.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.6e-35471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+  ++++sws++g sfvv+d+++f  ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++ik
   Pbr009953.1  47 FLNKTYDMVDDPVSNRVVSWSREGGSFVVWDPHTFVMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFVRGQKHLLKNIK 134
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Pbr009953.1 135 RRKA 138
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-6043136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-3543136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNYLYPVKEE YPGSSSSQSG PDFDPMVMMI PPPQPMEGLN DTGPPPFLNK TYDMVDDPVS  60
NRVVSWSREG GSFVVWDPHT FVMSLLPRYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFVRGQKHLL KNIKRRKAPS QPFPGQQTVG TCVELGQFGL DGEVDRLRRD KQVLMMELVK  180
LRQQQQSTRA YLQAMEQRLQ KTEMMQRQMM AFLARAMQNP AFIQQLVQHK EKRKELEEAM  240
TKKRRRPIDQ GTSGVGGGES SLRGKGINPV KNEPLEFGDC EYEMSELEAL AMEMQGLGKV  300
RKEQGEVVEP LDSGDKELDE GFWEELFSER FKGDLTIPSA EVGEDEDVII LADRLGYVGS  360
SPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-244513627129Heat shock factor protein 1
5d5v_B8e-244513627129Heat shock factor protein 1
5d5v_D8e-244513627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKNIKRR
2231245KRKELEEAMTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272377e-66AB627237.1 Malus x domestica mRNA, microsatellite: MEST080, clone: FRT01_22_F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018501675.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-127HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A498IS900.0A0A498IS90_MALDO; Uncharacterized protein
STRINGXP_009350363.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B