PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009756.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 717aa    MW: 80490.9 Da    PI: 4.7481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009756.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.00076076451154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Pbr009756.1 607 ERKEKLGERIVALQQLVSPF-----GKTDTASVLLEAMEYIRFL 645
                  57778888999999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF093686.3E-9533564IPR018972Sas10 C-terminal domain
Gene3DG3DSA:4.10.280.102.3E-8595655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.293596645IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0016602651IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-11603658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-4606650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MGKRGKSLKK SDGNPVQSKR KLRDEYSPIQ DDDMDDEIDA FHKQRDIIPL DVNEEHGDSD  60
EDNEQPVFVV RQQKFLREKF GAEDEMHDDE ENKEEEKPVW GGKKQNYYGV DNGDFDDDES  120
AEEEEAEVVR LQKERAKFST LDDYGLDDIW ENENDEELTF EEISTKGSST KRFPVGIDLA  180
DGTGTVYEEV KKDFCALSKE EQMDVLYNSA PELVGLLLEL NDAHEELERK VNPLMGKSEG  240
QPVRDHPVLA HLMEIKILLD KMKQLDGNLP SDFEEILSKY NWVAAVAKSG KETSIDASDS  300
FSKEYVPQPV LVEGEAAAVL HDIAKVEIAE PLKDDENHVG KRKFQNDEVG VQSMKMLKVR  360
AALEEKLKQK GVFSSIAPKT DKPRKLLKPL NGKLESYDDF DDDTVNIEGA VHGLNNGCAS  420
KLSQLAANPI KSKKVISGDD DLPWRDDIGE RRRKHELLVL AGAGIKSQAD TRDENATISD  480
AGDVEMEDSE TGDSEDDFYE QVKEKRAAKL AAKAEIYSRS STVPSLVDTE TVDGKRHITY  540
QMEKNRGLTC ARKKLIKNPR KNYKGEEGID VRKMTEHKRS PCAVDQSSIT SLPSKRHKTD  600
LSFSTKERKE KLGERIVALQ QLVSPFGKTD TASVLLEAME YIRFLHEQVK VLSAPYLQST  660
PTANTQELKP YSLRSRGLSL VPVSSTIGIA QSNGADIWAP IKTTSPKFEN DISHFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009756.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338125.10.0PREDICTED: something about silencing protein 10
RefseqXP_009338126.10.0PREDICTED: something about silencing protein 10
TrEMBLA0A314XIN00.0A0A314XIN0_PRUYE; Something about silencing protein 10
STRINGXP_009368225.10.0(Pyrus x bretschneideri)
STRINGXP_009368234.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-59bHLH family protein