PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr009554.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 373aa MW: 41776.3 Da PI: 8.7355

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr009554.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.4	1e-30	69	122	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ++R+ Pbr009554.1 69 SRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMHRS 122 69***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-28	65	123	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.976	65	125	IPR017930	Myb domain
SuperFamily	SSF46689	1.33E-14	66	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.9E-22	69	124	IPR006447	Myb domain, plants
Pfam	PF00249	4.5E-9	70	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEEVSKSSPF TSKREYDHED DEGEEDEVDE DGLQLSNNGV SSSNSNIDEN HEKKGASGSV 60 RQYVRSKTSR LRWTPDLHLR FVHAVERLGG QERATPKLVL QLMNVKGLSI AHVKSHLQMH 120 RSKKMEDPNQ VLTDQAGFFM EGGDNQLYNL TQLSMLQSFK QWPSSGLRYG ATDHSSWQGR 180 HYHHQIYGPY RSSRTTGLLD HNTRNIGLYG SVAERILGSN NNNIMTTSAN QLHTNLQSPN 240 PGQTTWRRHQ ITRDESYQTV IHRPCQDYHS WSAAIRDHQG QNMQKRKALD TDNSDLDLNL 300 SLKVPPKHGH GFGKGLQCGG DNHQKLLMGC SLSLSLSSSS SSKLGVKKLE RTTGYGDSKH 360 GKNMASTLDL TL*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEEVSKSSPF TSKREYDHED DEGEEDEVDE DGLQLSNNGV SSSNSNIDEN HEKKGASGSV  60
RQYVRSKTSR LRWTPDLHLR FVHAVERLGG QERATPKLVL QLMNVKGLSI AHVKSHLQMH  120
RSKKMEDPNQ VLTDQAGFFM EGGDNQLYNL TQLSMLQSFK QWPSSGLRYG ATDHSSWQGR  180
HYHHQIYGPY RSSRTTGLLD HNTRNIGLYG SVAERILGSN NNNIMTTSAN QLHTNLQSPN  240
PGQTTWRRHQ ITRDESYQTV IHRPCQDYHS WSAAIRDHQG QNMQKRKALD TDNSDLDLNL  300
SLKVPPKHGH GFGKGLQCGG DNHQKLLMGC SLSLSLSSSS SSKLGVKKLE RTTGYGDSKH  360
GKNMASTLDL TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-17	69	124	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-17	69	124	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-17	69	124	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-17	69	124	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr009554.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009345251.1	0.0	PREDICTED: uncharacterized protein LOC103937055
TrEMBL	A0A498KMP1	0.0	A0A498KMP1_MALDO; Uncharacterized protein
STRING	XP_009345244.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-42	G2-like family protein