PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr009547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 248aa MW: 27896.7 Da PI: 9.7255 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.8 | 3.4e-14 | 16 | 100 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +laLi+a ++ +l+rg l++++W+ev++++ +++f+ + +qCk++++ l+k+yk +k ++ st+p++++l+ Pbr009547.1 16 CWSEDATLALITAWGDRYLHLNRGILRQKDWKEVADAVnshqngGAKPFK-KDVQCKNRIDTLKKKYKLEKSKPGQ------STWPFYRRLH 100 7*************************************998665555555.579***************9999887......58*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-24 | 15 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDRLNRTHAP AGRDDCWSED ATLALITAWG DRYLHLNRGI LRQKDWKEVA DAVNSHQNGG 60 AKPFKKDVQC KNRIDTLKKK YKLEKSKPGQ STWPFYRRLH SIICSTPSNT AGATKSNPPI 120 LALSAKSPDP NTNPLGGSTD SSIRHDDGDD EAAVFEGGAA CRELARAISK FGEMYERIEN 180 SKRKQMMELE KQRMEFDKEL ALQRLSMFMD VQVELGKKMK HSKYSHSSGA AIVQNFNFNL 240 NLFMGFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr009547.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009345206.1 | 1e-173 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 2e-29 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A498KNU1 | 1e-166 | A0A498KNU1_MALDO; Uncharacterized protein | ||||
STRING | XP_009345206.1 | 1e-173 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 3e-55 | sequence-specific DNA binding transcription factors |