PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009541.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 276aa    MW: 29836.9 Da    PI: 9.365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009541.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27e-1487133354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++++k+L
  Pbr009541.1  87 RSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDHVKDL 133
                  78*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014471.02E-54151No hitNo description
PROSITE profilePS5088815.62484133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1385137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.10E-1187136No hitNo description
Gene3DG3DSA:4.10.280.102.3E-1587136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1187133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-1290139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.22E-4182230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDQNHYYAGT GVPSWSHQYN SAAAAAAISN ESSSSFLAPW PPPPPPPPPP PHVSSSNQFQ  60
FCGLPPSSWS STAADGFEED RAASASRSHS QAEKRRRDRI NAQLATLRKL IPKSDKMDKA  120
ALLGSVIDHV KDLKRKAMEV SKSFVVPTEV DEVTIDCDPA HTVNSATSST NKSRGSFLIR  180
ASVCCDDRPE LFSELIQVLK GLKLTAVRAD MASVGGRIKS VLVLCSKDGE EAVCTSTLKQ  240
SLKLVLSKLA ASSMAPNCRI RSKRQRFFLP FHCPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345143.10.0PREDICTED: transcription factor bHLH51-like
TrEMBLA0A498KM081e-174A0A498KM08_MALDO; Uncharacterized protein
STRINGXP_009345143.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-40bHLH family protein