PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009535.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 651aa    MW: 71294.1 Da    PI: 7.3293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009535.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06249269526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  Pbr009535.1 249 PCPEFRK-GSCQKGDVCEYAHG 269
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.0E-168157IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-1512131IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-854120IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.9154134IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00275484IPR002110Ankyrin repeat
PROSITE profilePS500888.5235478IPR002110Ankyrin repeat
CDDcd002049.46E-1456164No hitNo description
PROSITE profilePS5008810.17989124IPR002110Ankyrin repeat
SMARTSM002480.005889121IPR002110Ankyrin repeat
SMARTSM003561.8E-4244270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108244271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4249271IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.216279303IPR000571Zinc finger, CCCH-type
SMARTSM0035618279302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MESEFQKQKS VLVELSASDN LEAFRTEVEE KGFHIDEAGF WYGRRIGSKK MGFEERTPLM  60
IAAMFGSTRV LKYIIQSGMA DVNRGCGSDR VTALHCAAAG GSTASLEVVK LLLDASADAD  120
CVNANGNKPV DLIAPALKSP CSSRRKAMEM LLRGDKSIME SDTEEGDQQK VSSPQMSKEG  180
SEKKEYPIDI SLPDINNGIY GTDEFRMFTF KVKPCSRAYS HDWTECPFVH PGENARRRDP  240
KKYPYSCVPC PEFRKGSCQK GDVCEYAHGV FESWLHPAQY RTRLCKDETG CTRKVCFFAH  300
RPEELRPVYA STGSAMPSPR SMSVSAADMA ALSPLALGSS AMSMPATSTP PMSPLAAASS  360
PKSGGLWQNK VNLTPPALQL PGSRLKSACS ARDLELEMEL LGLDGHSSQQ QQQQQQQHLW  420
DEISRLSSSP SYSRHGELKP TNLDDAFGSF DPSLSSQLQG LSLKPSTPNH RQNMNQLRSS  480
YPTNLSSSPV RKPSSFGLDS PSALAAAVMN SRSAAFAQQR SQSFIDRGAM NHLPGLNAPV  540
NSSTMRQSSD WGSPGGKLDW GMQGDELNKL TKSASFGFRS NNAGPPGFKT PAVEEPDVSW  600
VNTLVRDVSS ERSELFGADK KQRYHHLNNG GHEMLPSWAE LMYIEQEQRA *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009535.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345008.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A498KSW10.0A0A498KSW1_MALDO; Uncharacterized protein
STRINGXP_009345008.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein