PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr009464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 560aa MW: 61314.9 Da PI: 6.3113 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.2e-16 | 33 | 78 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v +G ++W++Iar ++ gR++k+c++rw + Pbr009464.1 33 RGPWSPEEDAVLSRLVGNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 78 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 85 | 129 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Pbr009464.1 85 RKPFSEEEDHIIVSAHAIHGNK-WAVIAKLLP-GRTDNGIKNHWNST 129 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.509 | 30 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.21E-29 | 30 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 32 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 33 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-25 | 34 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-12 | 35 | 77 | No hit | No description |
PROSITE profile | PS51294 | 24.702 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-14 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 85 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 87 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.53E-10 | 87 | 130 | No hit | No description |
PROSITE profile | PS51292 | 19.018 | 428 | 494 | IPR011016 | Zinc finger, RING-CH-type |
Gene3D | G3DSA:3.30.40.10 | 1.0E-14 | 432 | 489 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.04E-9 | 433 | 490 | No hit | No description |
SMART | SM00744 | 8.8E-18 | 435 | 488 | IPR011016 | Zinc finger, RING-CH-type |
Pfam | PF12906 | 3.1E-9 | 436 | 487 | IPR011016 | Zinc finger, RING-CH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MTAPNDAVPK EADDRPGTEA ELNEGAVPGG KVRGPWSPEE DAVLSRLVGN FGARNWSLIA 60 RGIPGRSGKS CRLRWCNQLD PCVKRKPFSE EEDHIIVSAH AIHGNKWAVI AKLLPGRTDN 120 GIKNHWNSTL RRKCFDKGRF NTGHGEMMED DTFDRKNASS EETLSVGNIS SFKTHEGREV 180 LMENRPNQFD VRNHAKEGSG AAESKHNSTL IAESSDHPTL QSTTCRPVAR VSAFSVYNRP 240 SGPANASSFS RTVPSHGPLV PITKLDFGFD NFLDGACNEP MVPQRCGHSC CDRVKGHSQS 300 SLLGPEFVEY DEPLPFSSHE LISIATDLNK IAWIKSGLES NGIRMPESVA SQRVFQAAAT 360 TLQMGLPANT PMNDHMCFEE GRNKLMGMMT DVLSTQRCST ESGFEIVERE SSASESSVEV 420 DLEEVKMHVA KVERDCRICH LSMDATNHES GIPIELGCSC KADLAAAHKQ CAEAWFKIKG 480 NKTCEICGST ARNVSGLSEA ESAEQWHDEA ALAAAVAGAP VQTPESRNFW QGHRFLNFLL 540 ACMVFAFVIS WLFHFNVPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-37 | 32 | 133 | 6 | 107 | B-MYB |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr009464.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF016490 | 0.0 | EF016490.1 Malus x domestica cultivar Royal Gala Myb transcription factor (MYB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344337.1 | 0.0 | PREDICTED: transcription factor MYB35-like | ||||
Swissprot | Q42575 | 1e-79 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A498JFW2 | 0.0 | A0A498JFW2_MALDO; Uncharacterized protein | ||||
STRING | XP_009344337.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-97 | myb domain protein 109 |
Publications ? help Back to Top | |||
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