PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr009351.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 363aa MW: 39200.3 Da PI: 8.7988

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr009351.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	6.1e-38	75	135	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ Pbr009351.1 75 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-33	59	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-32	78	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.292	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MVFSSVPVYL DPPNWQQQQT NHHQQGGGCD QNNPQLPQQP SSEPRCTSRD GSGSLGSIKP 60 GSMSDQARLA KIPQPETALK CPRCESTNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR 120 SVPVGGGCRR NKRSKGGNSS RSKSPGAAGN SSSSTVNSSN SCSTSDNIIG RLTHPPPPPP 180 PHQLPFLPSL HHLTDYGSGD MIGLNNFGGI NQPGDVEFQH HQYGSDRLSA RPNILGMNNM 240 GISEHWRSSL LQQQFPNFLA NLEPPPSTTH GMYQSDGGDH QNVGQLPISK PLDHSAGNGV 300 TTTQMVNVKM EHSHQALNLS RNFLGSLGND HQYWGISTAG TGGNAWTDLS GFTSSSSTTH 360 LL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MVFSSVPVYL DPPNWQQQQT NHHQQGGGCD QNNPQLPQQP SSEPRCTSRD GSGSLGSIKP  60
GSMSDQARLA KIPQPETALK CPRCESTNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR  120
SVPVGGGCRR NKRSKGGNSS RSKSPGAAGN SSSSTVNSSN SCSTSDNIIG RLTHPPPPPP  180
PHQLPFLPSL HHLTDYGSGD MIGLNNFGGI NQPGDVEFQH HQYGSDRLSA RPNILGMNNM  240
GISEHWRSSL LQQQFPNFLA NLEPPPSTTH GMYQSDGGDH QNVGQLPISK PLDHSAGNGV  300
TTTQMVNVKM EHSHQALNLS RNFLGSLGND HQYWGISTAG TGGNAWTDLS GFTSSSSTTH  360
LL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr009351.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343295.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A498KPD5	0.0	A0A498KPD5_MALDO; Uncharacterized protein
STRING	XP_009343295.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	6e-41	Dof family protein