PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009276.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 324aa    MW: 36505.8 Da    PI: 6.5206
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009276.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.96.8e-1036107779
     trihelix   7 vlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                   l L++ +  +e +  ++ +  ++W+ +++++++ g++r+  q + kwe l  +yk ik++e k ++ +s  +
  Pbr009276.1  36 ELILVNEVAAVEGDCLKALSSFQKWKIIAQNCSALGVSRTLDQYRRKWEALFDEYKGIKQWEAKSRASDS-YW 107
                  55566666677777777788889****************************************9754444.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.6E-746102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKPEHTPSQL DRSHGSSGNR RSTRSQAAPD WNPTDELILV NEVAAVEGDC LKALSSFQKW  60
KIIAQNCSAL GVSRTLDQYR RKWEALFDEY KGIKQWEAKS RASDSYWVLG IERRKRNGLP  120
ENFDQELFRG IDKLVTVRGN QSDTDPDSDP EDEAEEEPDV DSEPESKRRR RRSTSQKSCP  180
RENSIRSCKR EKPQETHAEG KPQKTHAEEK PVGSGLKAIP PKSLAEEHPQ KSCVKKKLTN  240
SQRKEEAISI EEQEKIAAMK LHESADLIRA IVTEKPDHEA AGVKSTGDLQ TDFVRCQGDR  300
VIACLGDIVK TLDQLLHLVQ ECE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171KRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009276.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367973.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A498HQN90.0A0A498HQN9_MALDO; Uncharacterized protein
TrEMBLA0A498JAN20.0A0A498JAN2_MALDO; Uncharacterized protein
STRINGXP_009367973.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.18e-54sequence-specific DNA binding transcription factors