PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009044.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 503aa    MW: 55682.8 Da    PI: 6.1592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009044.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12356402455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Pbr009044.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 402
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4349235IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-17351422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.456352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.55E-14355406No hitNo description
Gene3DG3DSA:4.10.280.107.2E-17356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGEKFWVNEE DKVMVESVLG TEACRFLISL ASENVLSDLI RPSGKLGVQQ GLCQLVNGSN  60
WNYAIFWQAV GSKSGGSALC WGDGHCRDTK DGGAGDANSS RDSSLEAVQN KEEVKKQVVQ  120
KLHACFGGLN ADNYASRLDG VSDVEMFYHT SMCYAFQLDS ISHCGPAEAY NSRKSIWVSD  180
AGSCLHHYQS RSFLARLAGF QTVVFVPMKS GVVELGSVKS TPEEQSYVDI VRSAFGESSP  240
IQPKAFPMIF GRELSLGGPK SQSVNISFTP KIEEDFAFPP ESLELQSVGT SNGFPSEGGE  300
VKLFPQMNQM MVDGFNTQTR VSGSELLKDE SSTQVDEQKP RKRGRKPSNG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITHITD LQMKIRIIEA EKQMVNNKGK  420
QLPVPEIDFQ ERHEDAVVRM NFPLDSYPVS DVIRTLREHK IVPQESNVSI TDNDKVIHTF  480
SIQTQGGDAE KLKEKLVAFL SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-28350418270Transcription factor MYC2
5gnj_B3e-28350418270Transcription factor MYC2
5gnj_E3e-28350418270Transcription factor MYC2
5gnj_F3e-28350418270Transcription factor MYC2
5gnj_G3e-28350418270Transcription factor MYC2
5gnj_I3e-28350418270Transcription factor MYC2
5gnj_M3e-28350418270Transcription factor MYC2
5gnj_N3e-28350418270Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009044.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367720.10.0PREDICTED: transcription factor bHLH3-like
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLD9ZIN70.0D9ZIN7_MALDO; BHLH domain class transcription factor
STRINGXP_009367720.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-168bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]