PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr009042.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 474aa    MW: 52639.4 Da    PI: 7.2427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr009042.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12315361455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Pbr009042.1 315 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 361
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-3330194IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.4E-17309378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.456311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-13314365No hitNo description
Gene3DG3DSA:4.10.280.102.6E-16315380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9315361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MLSHHQYFSI TAKLSANLVP YARYSLVAVR SKSGGSALGW GDGHCRDTKD GGAGDANSSR  60
DSSLEAVQNK EEVKKRVVEK LHACFGGLHA DNYARRLDGV SDVEMFYLTS MCYAFQLDSI  120
SHCGPAESYN SRKSIWVSDA GSCLHHYQSR SFLARLAGFQ TVVFVPMKSG VVELGSVKST  180
SEEQSYVDMV RSAFGESSPI QPKASPMIFG RELSLGGPKS QSVNISFTPK VEEDFACHPE  240
SFELQSVGTS NGFPSEGGEV KLFPQMNQLM VDGFNTQTRV SSSELLKDES STQVDEQKPR  300
KRGRKPSNGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITHITDL  360
QMKIRVIEIE KQMVNNKGKQ LPVPEIDFLE RHEDAVVRMN CPLDSHPVSD VIRTLREHKI  420
VPQESNVSIT DNDKVIHTFS IQTQGGDAEK LKEKLVAFLS KWSDCHLYLY ASA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-28309377270Transcription factor MYC2
5gnj_B6e-28309377270Transcription factor MYC2
5gnj_E6e-28309377270Transcription factor MYC2
5gnj_F6e-28309377270Transcription factor MYC2
5gnj_G6e-28309377270Transcription factor MYC2
5gnj_I6e-28309377270Transcription factor MYC2
5gnj_M6e-28309377270Transcription factor MYC2
5gnj_N6e-28309377270Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr009042.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505393.10.0PREDICTED: transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-163MTB3_SOLLC; Transcription factor MTB3
TrEMBLD9ZIN70.0D9ZIN7_MALDO; BHLH domain class transcription factor
STRINGXP_009367780.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-142bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]