PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr008831.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 450aa MW: 50098.7 Da PI: 6.8242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr008831.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.6e-08	351	393	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Pbr008831.1 351 AAARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 393 567*****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.339	344	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-13	350	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-14	350	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-5	352	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-12	353	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.74E-4	366	398	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MDGLDWDGSH ITNTSTLLWS NHQVHDLEES FLLSNSSSSA FIPIQELPKV QTSHVIMNSN 60 TERSSNIGTH QIAHQKNCCG LDSVHDMPTL RADELCQSPL NISRPYNLMS SLSTSTFMAA 120 DHYGNIGKHV QPQANFHGLQ DQHVKAKPAT TCSVESLDCL LSGTNSNTDT SVEDDDGISM 180 LFSDCRRNLW NFRAGNNSAN SSGDSENNET VVSQSSSDLY VQIQGKPNST KRSHDQSEPK 240 LHGANYSHFG LLQKDYSSTS EGDFRLISEN PPKPKKLRSE NKRPSSSNIS FRQPCSSVPT 300 SCIEEPDPEA IAQMKEMIFR AAAFRPVNLE LEMVERPKRK NVKISSDPQT AAARQRRERI 360 SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENLGHKIESM SNFNIPPTSF 420 AFSFNPSFPM QTHNHNPLQN PYHIDQPHS*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MDGLDWDGSH ITNTSTLLWS NHQVHDLEES FLLSNSSSSA FIPIQELPKV QTSHVIMNSN  60
TERSSNIGTH QIAHQKNCCG LDSVHDMPTL RADELCQSPL NISRPYNLMS SLSTSTFMAA  120
DHYGNIGKHV QPQANFHGLQ DQHVKAKPAT TCSVESLDCL LSGTNSNTDT SVEDDDGISM  180
LFSDCRRNLW NFRAGNNSAN SSGDSENNET VVSQSSSDLY VQIQGKPNST KRSHDQSEPK  240
LHGANYSHFG LLQKDYSSTS EGDFRLISEN PPKPKKLRSE NKRPSSSNIS FRQPCSSVPT  300
SCIEEPDPEA IAQMKEMIFR AAAFRPVNLE LEMVERPKRK NVKISSDPQT AAARQRRERI  360
SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENLGHKIESM SNFNIPPTSF  420
AFSFNPSFPM QTHNHNPLQN PYHIDQPHS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	353	358	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr008831.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010548	2e-54	AP010548.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT22C05, TM1867a, complete sequence.
GenBank	FJ379751	2e-54	FJ379751.1 Lotus japonicus putative basic helix-loop-helix protein BHLH11 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009367503.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	5e-84	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A498J0B2	0.0	A0A498J0B2_MALDO; Uncharacterized protein
STRING	XP_009367503.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]