PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr008717.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25405.2 Da PI: 10.2388 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.4 | 3.3e-15 | 133 | 219 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +k +++s+v+ +l lpk f++++ +k ++ +tl de+ + ev + +k++ l++GW++F+ ++gL +gD +vF++++ ++ + ++ Pbr008717.1 133 VKPMLQSHVTGGFWLGLPKYFCSKNL-PK-RDDIVTLIDEDEDECEVIYLAEKRG----LSGGWRGFAIDHGLVDGDALVFQRIRPKTLKVWL 219 68999*****************9994.43.4558***************545554....9**********************88766666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-20 | 126 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-16 | 128 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.02E-22 | 130 | 217 | No hit | No description |
PROSITE profile | PS50863 | 9.798 | 132 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-17 | 132 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-13 | 133 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVAPKLSYEE SRRQRMEENK KRMEALNLPM LAQSLKKNSN SPKPSPMKRA KARTVEKQLV 60 EVRRSSRVAN LPTPVYKEVK VVVDREMRPR RYSTNRHRDL SNRVYASDEA RDDATARAEA 120 LESGLGSSYP TMVKPMLQSH VTGGFWLGLP KYFCSKNLPK RDDIVTLIDE DEDECEVIYL 180 AEKRGLSGGW RGFAIDHGLV DGDALVFQRI RPKTLKVWLQ VS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr008717.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009367365.1 | 1e-161 | PREDICTED: B3 domain-containing protein At3g19184-like | ||||
Refseq | XP_018505339.1 | 1e-161 | PREDICTED: B3 domain-containing protein At3g19184-like | ||||
Swissprot | Q69V36 | 2e-71 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A498HR42 | 1e-142 | A0A498HR42_MALDO; Uncharacterized protein | ||||
STRING | XP_009367365.1 | 1e-160 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-62 | B3 family protein |
Publications ? help Back to Top | |||
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