PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr008716.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25128.9 Da PI: 9.9527 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 7e-15 | 135 | 219 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k++++s+v+ +l l +f+++h + ++ +tl de+g ++ + rk++ l++GWk+F+ a++L +gD +vF+l++ ++f kv Pbr008716.1 135 VKTMLQSHVTGGFWLGLQVSFCKNHlpK----GDEVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRPTTF----KV 219 699*******************888443....4458***************656665....************************985555....44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.08E-21 | 127 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-17 | 127 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.93E-24 | 132 | 219 | No hit | No description |
PROSITE profile | PS50863 | 10.179 | 134 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-19 | 134 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-12 | 135 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVMAKSKLSY EESRQQRLEE NKKRMEALNL PMLAQALNKT PNSPKPSPMK RAGKPRTYEV 60 QMVEVRRSTR VANRPAPDYK EVVAERVMIP RRSYATNRHR DVANRVYASD EARAAAMVKA 120 DELEASLGSD HPTLVKTMLQ SHVTGGFWLG LQVSFCKNHL PKGDEVMTLI DEDGDEYPTI 180 YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRPTTFKVI DKAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr008716.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009367366.1 | 1e-164 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_009367367.1 | 1e-164 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 2e-74 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A498HT62 | 1e-157 | A0A498HT62_MALDO; Uncharacterized protein | ||||
STRING | XP_009367366.1 | 1e-163 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 8e-77 | B3 family protein |
Publications ? help Back to Top | |||
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