PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008711.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 282aa    MW: 30418.5 Da    PI: 9.2086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008711.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-1264111455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h   Er RR+++++ f++L  llP++      K +K++i+ +Av Y+k Lq
  Pbr008711.1  64 MHILTERERRKKMRNMFANLHALLPQL----PAKADKSTIVDEAVSYVKTLQ 111
                  79999*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-1658122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.87260110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1663123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-1063107No hitNo description
PfamPF000105.7E-1064111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1066116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00218205243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEISAEGHNQ EKTVPPPPPA AGKKRKGGGG GVGKNVKAKG KGSTRTGDKG KGVAGGNESD  60
DHEMHILTER ERRKKMRNMF ANLHALLPQL PAKADKSTIV DEAVSYVKTL QQTLQKLQKQ  120
KVERLQGVTT INLDLDPSIN TQDVAFSSRE AFLANHGSSN LATASTTPTS NPSNSFSASH  180
FASVNFQTWT SPNVVANICG EEAHISVCTP KKPSLFTAIC FLLEKYNIGV ISAHITSDSN  240
RSMYMIHTHA RGAPDQFFEV FPAMEIFRQA VAEIMLVVEG C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008711.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020409135.11e-106transcription factor bHLH95
TrEMBLA0A498K0N51e-151A0A498K0N5_MALDO; Uncharacterized protein
STRINGXP_009350991.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-23bHLH family protein