PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008582.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 485aa    MW: 53986.5 Da    PI: 6.2753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008582.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-05367387121
                  EEETTTTEEESSHHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                  + C+ C+++F+++s+ +rH+ 
  Pbr008582.1 367 FFCETCDRRFRSQSSARRHMD 387
                  67*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.0E-17184254IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.3E-12184234No hitNo description
PROSITE profilePS5008912.268185230IPR001841Zinc finger, RING-type
CDDcd001622.91E-10185233No hitNo description
SMARTSM001841.4E-6185229IPR001841Zinc finger, RING-type
PfamPF134452.7E-7185227IPR027370RING-type zinc-finger, LisH dimerisation motif
PROSITE patternPS005180201210IPR017907Zinc finger, RING-type, conserved site
Gene3DG3DSA:3.30.40.106.0E-17363386IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576673.69E-5364406No hitNo description
PfamPF128740.0011367386No hitNo description
SMARTSM003550.67367391IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221367396IPR007087Zinc finger, C2H2
PROSITE patternPS000280369391IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-6395447No hitNo description
PfamPF128740.0087396415No hitNo description
PROSITE profilePS501578.663396419IPR007087Zinc finger, C2H2
SMARTSM003556.1396419IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280398420IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787425452IPR007087Zinc finger, C2H2
SMARTSM003550.063425447IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280427447IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MFNVVESFIR HDTIFSLSFN HLLTQLQPSS HSSSATTPSS HSASTIFSLS FNHLLTQLQP  60
SSHSSSATTP SSHSASTIFS LSFNHLLTQL QPSSHSSSAT TPSSHSASTI FSLSFNHLLT  120
QLQPSSHSSS ATTPSSHSAS TIFSLTPSSQ LHLLDTGHGP DRTRVDLRGK SCPTLTSSVR  180
LLTPCKICYD IFYRPVALLN CLHAFCGSCA ALWFQEQASQ SLGLTCPTCR TEVQGSAHDA  240
RASTLVDLFL GQYPDKARSD EAKREMDQGY RAGGQVLPDV ASVNDAEQLG LEDRRQGDGL  300
DWGVPTFGQI PTFQQVGAFW QTADEETSLE QEGDAPQTSD EERELIDLAA AMTISAHGRE  360
PHREARFFCE TCDRRFRSQS SARRHMDHAD HWAERFWCET CPRTFLSERS AQQHMDDTHH  420
WAQRFQCNAC QRVFFSELAV EYHIEQHMDD LEQYMNDMEQ DIHNRTAHGR HGPLDRTLPR  480
RDGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008582.1