PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr008509.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HSF

Protein Properties

Length: 484aa MW: 54241.1 Da PI: 5.6084

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr008509.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.6	5.4e-35	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e++sws+n++sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +++k+ll++i+ Pbr008509.1 16 FLLKTYDMVDDSATDEIVSWSSNKKSFIVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIQDQKHLLKNIH 103 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Pbr008509.1 104 RRK 106 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.2E-37	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.43E-35	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.2E-60	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-19	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.4E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.9E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFIVWNPPEF ARVLLPTYFK 60 HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD 120 SERAALDDEI EKLSHDKAAL EANISRFKQQ RSEAKLQLED LTQRVSGMEQ RQKNLVTFLD 180 RAVHNPNFVE HLTRKIESMD FLAYHKKRRL PDIDHLQPVV ENGFVDNRSS SRSEFGNIFH 240 QDFSSKLRLE LSPAVSDMNL VSRSTQSSNE DGGSSTRKIS EELKGAQMRT EGVLFAPETL 300 ELSDTGTSFA FKMDSLLLRK APTVGSPRRH SLEPGLPSNE EGDGHLSCHL NLTLASTPLQ 360 VSSSPYLATV PQVGQDINES AASELNENGK DSDLRAFTNK NIADDDKPKT SSREATHNNQ 420 APPPVPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPFD EQDDGRLDHG MSRNVKDAET 480 LTL*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFIVWNPPEF ARVLLPTYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
SERAALDDEI EKLSHDKAAL EANISRFKQQ RSEAKLQLED LTQRVSGMEQ RQKNLVTFLD  180
RAVHNPNFVE HLTRKIESMD FLAYHKKRRL PDIDHLQPVV ENGFVDNRSS SRSEFGNIFH  240
QDFSSKLRLE LSPAVSDMNL VSRSTQSSNE DGGSSTRKIS EELKGAQMRT EGVLFAPETL  300
ELSDTGTSFA FKMDSLLLRK APTVGSPRRH SLEPGLPSNE EGDGHLSCHL NLTLASTPLQ  360
VSSSPYLATV PQVGQDINES AASELNENGK DSDLRAFTNK NIADDDKPKT SSREATHNNQ  420
APPPVPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPFD EQDDGRLDHG MSRNVKDAET  480
LTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-21	3	105	17	129	Heat shock factor protein 1
5d5v_B	6e-21	3	105	17	129	Heat shock factor protein 1
5d5v_D	6e-21	3	105	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr008509.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR132193	0.0	KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009350929.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-163	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A172C4J7	0.0	A0A172C4J7_9ROSA; Heat shock factor 2
STRING	XP_009350928.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-166	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]