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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pbr008439.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 30834.5 Da PI: 10.2144 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr008439.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 338.6 | 1.6e-103 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mddd+ + rn+gyyep+ +k +l+lqlmss+aerd k+ r+ + + + ++a+++rd m++ +r++++++ ++k+l+++
Pbr008439.1 1 MDDDALNMRNWGYYEPS--FKGHLSLQLMSSMAERDIKPfapgRDPAV-MVSANGAYHPRDcvvsdaqlpMNY-MRESWVNQ--------RDKFLNMM 86
9***9999*******99..********************9*9999998.999*********999999999999.88899998........78999*99 PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+ a+p++ vl++t+ ++slq l+++ + e+ e++ + ke ++kkrq + pk++k kk++k +k++ +++s+
Pbr008439.1 87 P-------ANPNYAAVLPETSGAHSLQI-----LQPPEASRDERVGRM-----EEPVVPKEGGTSKKRQGGGAPKAPKVKKPRK----PKDN-ANPSV 162
9.......468899**********9999.....555554422322222.....2344556666677777778888888888777....3233.44443 PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
+r+k kks+d+v+ng+++D+s++P+PvCsCtGa +qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++n
Pbr008439.1 163 -PRVKPAKKSLDVVINGINMDISGIPIPVCSCTGAAQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFAN 259
.79*********************************************************************************************** PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
p+DL+ hWAkHGtnkfvt+r
Pbr008439.1 260 PIDLRFHWAKHGTNKFVTLR 279
******************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLSLQLMSSM AERDIKPFAP GRDPAVMVSA NGAYHPRDCV 60
VSDAQLPMNY MRESWVNQRD KFLNMMPANP NYAAVLPETS GAHSLQILQP PEASRDERVG 120
RMEEPVVPKE GGTSKKRQGG GAPKAPKVKK PRKPKDNANP SVPRVKPAKK SLDVVINGIN 180
MDISGIPIPV CSCTGAAQQC YRWGCGGWQS ACCTTNVSMY PLPMSTKRRG ARIAGRKMSQ 240
GAFKKVLEKL AAEGYNFANP IDLRFHWAKH GTNKFVTLR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM244747 | 0.0 | KM244747.1 Malus hupehensis basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |
| GenBank | KP657685 | 0.0 | KP657685.1 Malus baccata basic pentacysteine 1 protein (BPC1) mRNA, complete cds. |
