PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008352.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 717aa    MW: 78776.2 Da    PI: 7.21
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008352.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23121222199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ 
  Pbr008352.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVSGDSIVFL--RAENGD 214
                  89****************************996555555..89***********************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Pbr008352.1 215 LCVGIRRA 222
                  9****997 PP
2Auxin_resp113.52e-37290373183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++++FevvY+Prast+eF+vk + v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+
  Pbr008352.1 290 AATLAANGQPFEVVYYPRASTPEFCVKSSLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 373
                  68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-36116225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-29117224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-20120221No hitNo description
SMARTSM010191.2E-20121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07121223IPR003340B3 DNA binding domain
PfamPF023622.0E-21121222IPR003340B3 DNA binding domain
PfamPF065072.0E-32290373IPR010525Auxin response factor
PROSITE profilePS5174514.578614699IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MITFMDSKEK LKEGDRCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRVPPHILCR VAAIKFMADP ETDEVYAKIR LVPLNMAEAG YEDDGIGGLN GTETPDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV SGDSIVFLRA ENGDLCVGIR RAKRGIGGGS ESSSGWNPTG  240
GNCTVPYGGF SAFLREDENK LMKNGHGNGS NSNGSLMGKG KVGPESVFEA ATLAANGQPF  300
EVVYYPRAST PEFCVKSSLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE  360
PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP  420
DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH AHYGLSFSDM HLNKLHTGLF  480
PAGFPPLDHA AAPTKFSNNT MIQKPTMSEN LSCLLTMSHS TQTSKKPDDV KPTQLILFGR  540
PILTEQQISL SSSGDTVSPV LTGNSSSDGN ADKMANHSDN SGSALQQSIQ ERSSCEGFHW  600
YKDNRHETEP NLETGHCKVF MESEDVGRSL DLSLLGSYDE LYRKLADMFG IDNSETLNHV  660
LYRDGTGAVK HVGDEPFRYG SIPIESCNGS KGRSYFMKTA RRLTILMDLG SNNVGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-79339432388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008352.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774220.0FJ177422.1 Malus x domestica putative auxin response factor ARF16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342923.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A498IAE10.0A0A498IAE1_MALDO; Auxin response factor
STRINGXP_009342923.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]