PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008289.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 417aa    MW: 46240.5 Da    PI: 9.0137
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008289.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17133182155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pbr008289.1 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 182
                  78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-9133182IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-16133192IPR016177DNA-binding domain
CDDcd000181.55E-24134192No hitNo description
PROSITE profilePS5103217.609134190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17134190IPR001471AP2/ERF domain
SMARTSM003802.8E-32134196IPR001471AP2/ERF domain
CDDcd000181.06E-14225278No hitNo description
SuperFamilySSF541714.38E-6225277IPR016177DNA-binding domain
PROSITE profilePS510328.623226276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-5226277IPR001471AP2/ERF domain
SMARTSM003803.1E-14226282IPR001471AP2/ERF domain
PRINTSPR003671.5E-5227238IPR001471AP2/ERF domain
PRINTSPR003671.5E-5258278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MLDLNLGFVS HDVVPDSHHK LLSTTPIESS ESFNSSSNLT LAGEDDDNSA TLNFLAPNDD  60
VSANHYDGRR TIQLFPLAQS VRSSSSSSAS KKQWLGRSSG SRLEPIYYAP AEQRIAPPQQ  120
VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHSAA RAYDRAAIKF  180
RGTEADINFS VSDYEDDIKQ MSNFTKEQFV HILRRQSTGF SRGSSKFRGV TLHKCGRWEA  240
RMGQFLGKNI VLLFETRAYD KAAIECNGRE AVTNFDSSSY DGELMSEANN KAPMRSQLSH  300
GSMVASEVPP IMSNMNSSFL PIHMERAMEK SMDVNSFPSR AWQLQDLNGR PTSMPLFSAA  360
ASSGFPSSTA TSSSSAVTQL HFPNKAILRH HFSPHSPPTP PIFIAEAENQ EQFTIG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008289.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499735.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotB8AMA91e-88AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A498IET30.0A0A498IET3_MALDO; Uncharacterized protein
STRINGXP_008387676.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.26e-83AP2 family protein