PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008285.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 343aa    MW: 38629.6 Da    PI: 6.545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008285.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-0690113226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC f+ + G+C  G +CkF+H+
  Pbr008285.1  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                  6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-488114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06588115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.624142180IPR000571Zinc finger, CCCH-type
SMARTSM003560.97144179IPR000571Zinc finger, CCCH-type
PfamPF165435.3E-17199278IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQS LKQSVEPKAD PSKTAVKKKK  60
GEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DNEETMEGWD QETLEKVCKY FLEAVEKKQY GWFWVCPNGG KNCHYRHALP  180
PGYVLKSQMK ALLEEESEKI PIEEEIENQR AKLTTSTPMT PELFMQWRTK KIAERDAGLA  240
VQMAERAKND RMSGRELFLS DSSLFVDDAE AHGNYQREQD PAVSEKKAIE NSNGYGPSNP  300
ATAGGDAEVT NFNDDDELDI DELNELEASL AKVTIQEPGA RA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008285.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337225.20.0zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-159C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A498K1650.0A0A498K165_MALDO; Uncharacterized protein
STRINGXP_008337225.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-146C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]