PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr008254.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 1072aa MW: 117981 Da PI: 5.3915

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr008254.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.9e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Pbr008254.1 598 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.279	583	669	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.8E-21	879	967	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.3E-23	880	962	No hit	No description
PROSITE profile	PS51745	21.19	883	965	IPR000270	PB1 domain
SMART	SM00666	2.8E-22	883	965	IPR000270	PB1 domain
CDD	cd06407	4.22E-32	884	964	No hit	No description
Pfam	PF00564	2.6E-17	886	963	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MDYHFSPKDK GNDHWASARA QVENLASFDD GTRNPISEDM FNNISELMNF DTYAGWCSPA 60 ATDQIAASLG MPSCPSVTYT PLDALNLVEH NGEQLLVTSG AGTFNVGGSF NCGDKIVFEH 120 MGTPQYGVST DSNDANDSIV KLNNGSFQQN NVMGMEDYMI YRPPGLSLNE KMLKALSMFK 180 ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILTGYR EVSRMFTFSA EEKQGSILGL 240 PGRVFVSKTP EWTSNVSFYN KTEYLRVDHA ANHQVRGSIA LPIFDFDLES SCCAVLELVS 300 TKEKPNFDTE MEIVCSALQA VNLKTNAPLR LLPQCLSKNQ RAALTEINDV LRAICHAHLL 360 PLAMTWIPCC YSEGDGDGIK RVRVKGGFTN SDEKCILCIE ETACYVNDRR MQGFVHACAE 420 HHLEEGEGIA GKALQSNHPF FMNDVKAYNI YEYPLVHHAR KYGLNAAVAI RLRSTYTGDD 480 DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ RICKSLRTVS DAELVGLGGA NTGFQKETSP 540 NIPERNFQTT LSDSEMNSAE NVTFNVFNQR NRGIERVNPP KQAPSGSIRQ AEKKRSTAEK 600 NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KYDPTTGGFV ATGSIIQEVD APKNLLFPEK NLLIENSESV AQHPISMPSM 720 SYNNGESLTV KLEEDGNCVP TSHEKEVKTQ SIPFMPQGDS KPIAMDFGSC DPTNHGITPD 780 LKGSYLAKEV NKWGHIQNSL RLDNSDCHFV SQNSSFLGPA DEMDIGVHGD DGIVEYNQHS 840 SSSLTDSSND FGSTMQGYSS STQSFEEQKH PQVETSTAEN GSKIIVKATY KEDTIRFKFE 900 PSLGCLQLYE EVAKRLKLQN GTFQLKYLDD EEEWVMLVSD ADLQECLEIL DDIGKRCAKF 960 MVRDIPSGVG SSGSSNFLGI GMYAGLATDG IFVIWHTHGF SPVLISVGMA PPVSHNPSSR 1020 IGDGFRFSPL MITPVMISMV SLFVLIPIKM FNSLGALSLS EDGSLVPMPH G*

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MDYHFSPKDK GNDHWASARA QVENLASFDD GTRNPISEDM FNNISELMNF DTYAGWCSPA  60
ATDQIAASLG MPSCPSVTYT PLDALNLVEH NGEQLLVTSG AGTFNVGGSF NCGDKIVFEH  120
MGTPQYGVST DSNDANDSIV KLNNGSFQQN NVMGMEDYMI YRPPGLSLNE KMLKALSMFK  180
ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILTGYR EVSRMFTFSA EEKQGSILGL  240
PGRVFVSKTP EWTSNVSFYN KTEYLRVDHA ANHQVRGSIA LPIFDFDLES SCCAVLELVS  300
TKEKPNFDTE MEIVCSALQA VNLKTNAPLR LLPQCLSKNQ RAALTEINDV LRAICHAHLL  360
PLAMTWIPCC YSEGDGDGIK RVRVKGGFTN SDEKCILCIE ETACYVNDRR MQGFVHACAE  420
HHLEEGEGIA GKALQSNHPF FMNDVKAYNI YEYPLVHHAR KYGLNAAVAI RLRSTYTGDD  480
DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ RICKSLRTVS DAELVGLGGA NTGFQKETSP  540
NIPERNFQTT LSDSEMNSAE NVTFNVFNQR NRGIERVNPP KQAPSGSIRQ AEKKRSTAEK  600
NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVQGVEGGL KYDPTTGGFV ATGSIIQEVD APKNLLFPEK NLLIENSESV AQHPISMPSM  720
SYNNGESLTV KLEEDGNCVP TSHEKEVKTQ SIPFMPQGDS KPIAMDFGSC DPTNHGITPD  780
LKGSYLAKEV NKWGHIQNSL RLDNSDCHFV SQNSSFLGPA DEMDIGVHGD DGIVEYNQHS  840
SSSLTDSSND FGSTMQGYSS STQSFEEQKH PQVETSTAEN GSKIIVKATY KEDTIRFKFE  900
PSLGCLQLYE EVAKRLKLQN GTFQLKYLDD EEEWVMLVSD ADLQECLEIL DDIGKRCAKF  960
MVRDIPSGVG SSGSSNFLGI GMYAGLATDG IFVIWHTHGF SPVLISVGMA PPVSHNPSSR  1020
IGDGFRFSPL MITPVMISMV SLFVLIPIKM FNSLGALSLS EDGSLVPMPH G*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr008254.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341785.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A498ICB4	0.0	A0A498ICB4_MALDO; Uncharacterized protein
STRING	XP_009341785.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]