PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr008210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27158.7 Da PI: 8.6219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.3e-12 | 70 | 116 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr llP + K +Ka+ L k+v+ +k+L Pbr008210.1 70 KNHKEAEKRRRERINSHLHKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 116 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.07E-10 | 70 | 119 | No hit | No description |
Pfam | PF00010 | 3.6E-10 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 71 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 71 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-11 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 4.7E-5 | 155 | 220 | No hit | No description |
SuperFamily | SSF55021 | 7.32E-5 | 155 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQPGNHQSQE LYRFLVQNGL ISVNNDHQLS AMQSFCSSSS NNYSYYPLEL SGVSTEHDAS 60 PQDRALAALK NHKEAEKRRR ERINSHLHKL RGLLPCNSKT DKASLLAKVV QRVKELKQQT 120 SEIAELETFP SETDEITVLS SNDYTNDGRI VFKASLCCED RSDLLPDLIE ILKSLHLKTI 180 KAEIATLGGR IRNVFIVAAD KDHTIESVNF LQNALKSLLE RSNSSERSKR RRVLDRTLVL 240 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 232 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr008210.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689424 | 0.0 | KP689424.1 Prunus pseudocerasus isolate Unigene8039 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009350864.1 | 1e-176 | PREDICTED: transcription factor bHLH106-like | ||||
Refseq | XP_009350865.1 | 1e-176 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 1e-87 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | D9ZIP1 | 1e-161 | D9ZIP1_MALDO; BHLH domain class transcription factor | ||||
STRING | XP_009350864.1 | 1e-176 | (Pyrus x bretschneideri) | ||||
STRING | XP_009350865.1 | 1e-176 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-80 | bHLH family protein |
Publications ? help Back to Top | |||
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