PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008168.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 448aa    MW: 48961 Da    PI: 9.5206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008168.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05211233223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg+ F   +nL+ H+ + H
  Pbr008168.1 211 PCPECGEIFMKAENLELHQAVrH 233
                  7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037210238IPR007087Zinc finger, C2H2
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-21235445No hitNo description
Gene3DG3DSA:3.90.228.104.4E-14236444IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSSSAMASSN KPKTQRKPTK QTHQKLQKHH ENKNPKPQKA EKNPAEKPPY WSVVRGLLTC  60
KHLQLVQLPQ KQPNEQQAME EANNAAKKCK KMRCSGSLCN NTKIMQRPEM LASPEVHKKR  120
ASSSMGFSGH SNETSSRSMK APLHEINGVV STSSSSFSAV SSSNNSSSAA GGGSFRAMPF  180
RRFSGCYECR MVVDPVLGFA RDPSLRGSIC PCPECGEIFM KAENLELHQA VRHAVSELGP  240
EDTSKNIVEI IFQSSWLKKE TPICKIDRIL KVHSTQNTIT KFEEYRDSIK AKATKLPKKH  300
PRCIADGNEL LRFHCTTFAC SLGLNGSSNL CNSIPHCNVC SIIKNGFNKF SGELTEQGIL  360
TTATSGRAHD KAVVAAEEGD KRAMLVCRVI AGRVKKTVEG SVGNGNVSME EYDSVAGAVG  420
VYSNLDELYV FNPKAILPCF VVIYGGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008168.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366983.10.0PREDICTED: uncharacterized protein LOC103956687
TrEMBLA0A498HYJ40.0A0A498HYJ4_MALDO; Uncharacterized protein
STRINGXP_009366983.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-104C2H2-like zinc finger protein