PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008076.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8696.35 Da    PI: 10.9572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008076.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.2e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 kri++k++rqvtfskRr+g++KKA ELSvLC++ev ++ifs++g+lye++s
  Pbr008076.1  9 KRIDDKIRRQVTFSKRRTGLMKKARELSVLCGVEVGLVIFSPKGRLYEFCS 59
                 79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-28266IPR002100Transcription factor, MADS-box
CDDcd002651.85E-36263No hitNo description
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MGRGKVQLKR IDDKIRRQVT FSKRRTGLMK KARELSVLCG VEVGLVIFSP KGRLYEFCSG  60
ERYAPLNFFF LPPPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-18161161Myocyte-specific enhancer factor 2B
1tqe_Q2e-18161161Myocyte-specific enhancer factor 2B
1tqe_R2e-18161161Myocyte-specific enhancer factor 2B
1tqe_S2e-18161161Myocyte-specific enhancer factor 2B
6c9l_A2e-18161161Myocyte-specific enhancer factor 2B
6c9l_B2e-18161161Myocyte-specific enhancer factor 2B
6c9l_C2e-18161161Myocyte-specific enhancer factor 2B
6c9l_D2e-18161161Myocyte-specific enhancer factor 2B
6c9l_E2e-18161161Myocyte-specific enhancer factor 2B
6c9l_F2e-18161161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008076.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640155e-94KP164015.1 Pyrus pyrifolia clone PpFLC FLC-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957757.17e-37truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ9SAR12e-25MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBLA0A2P6S6L43e-36A0A2P6S6L4_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_009344924.12e-34(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.18e-28AGAMOUS-like 79
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jang YH, et al.
    Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.
    Plant Cell Physiol., 2009. 50(8): p. 1479-92
    [PMID:19561057]
  3. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]