PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr008043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44651.5 Da PI: 7.3418 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.3 | 1.5e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nratk+g+Wkatg+dk + + Pbr008043.1 9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATKAGFWKATGRDKCIRN- 104 69****************************.99**************963433332556*************************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++g++ktLvfy+grap+g+ktdW+mheyrle Pbr008043.1 105 TFKQIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138 8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-59 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.964 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MANSSSGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMEV IREVDLNKME PWDLQERCRI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATKA GFWKATGRDK CIRNTFKQIG MRKTLVFYRG 120 RAPHGQKTDW IMHEYRLEDS DDPHGNLSSE DGWVICRVFK KKNLFKVANE GGSSSMNSSD 180 HQQLKNTSTN SQLQARSFMH SHGDNQYLLR QQLHAATQAF ELNNNPSLHY AHLQPPPHYS 240 PFQSQALIPT FAHKPLSACD DYSSQLPSDD SPSHGMVKQL MTNPRDCESG SEGLRYQACE 300 PVLEVGTCEP NHQLNTVAGG AGAAGGRDNN HDHQGMSEWA MLDRLVTSHD LGNDQDSSSK 360 GAARYEDANA PSSVNQINPQ HLSLRGEMDF WGYAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3ulx_A | 4e-51 | 9 | 163 | 15 | 170 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-51 | 9 | 163 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 9 | 163 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr008043.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210382 | 9e-41 | AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366882.1 | 0.0 | PREDICTED: protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-151 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A498K3U6 | 0.0 | A0A498K3U6_MALDO; Uncharacterized protein | ||||
STRING | XP_009366882.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8752 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-152 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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