PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007784.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 443aa    MW: 50613.9 Da    PI: 8.008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007784.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.41.6e-29123227199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f kv tpsdv+k++rlv+pk++ae++    ++++ ++  l ++d+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Pbr007784.1 123 FAKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNDKGLFLNFQDRMGKPWRFRYSYWNSSQSYVITKGWSRFVKEKKLDAGDIVSFERGvGEsGKDRL 220
                  89***************************9445557789************************************************65577678888 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++++
  Pbr007784.1 221 FIDWRQR 227
                  8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-41118236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-30120226IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-27121217No hitNo description
SMARTSM010198.2E-23123228IPR003340B3 DNA binding domain
PfamPF023623.2E-27123227IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522123228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEFMQRDQKG YSDKEDQDQD LEQKDQEEEE DIITTSKFSS SSSHTSTNSN YGSSPKYKAI  60
LFPPPPDHQQ QYGQQKPRLN IQNHGSQKAI NFMDLSLNKD IQAAEGGTDE NYWPVSCERE  120
HLFAKVVTPS DVGKLNRLVI PKQHAERYFP LDSSSNDKGL FLNFQDRMGK PWRFRYSYWN  180
SSQSYVITKG WSRFVKEKKL DAGDIVSFER GVGESGKDRL FIDWRQRPPP TPPPQLHHHN  240
HYAGGRFYSL LQRPLPSSVI SSMPLRHHEH FLHSNNNVHH PYHHHHHDHQ IMNQQYLPHQ  300
IHQLQGGSGH HVIHHQYPRV IDSVPLYQHG NYRSSTTSTS SESASVASAG KKLRLFGVNM  360
ECSSSPTEKE DHQECQILSS TAIPYHHHHH HNLPSSTSSL ASAPLQFMRL PNTSSSSTPP  420
DHHFLSNKGK STTTSLSFYL NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-631172282114B3 domain-containing transcription factor NGA1
5os9_B1e-631172282114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366578.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-74NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A498JH800.0A0A498JH80_MALDO; Uncharacterized protein
STRINGXP_009366578.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-69B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]