PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr007679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | G2-like | ||||||||
Protein Properties | Length: 445aa MW: 49250.2 Da PI: 8.2028 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.8e-33 | 75 | 129 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Pbr007679.1 75 KPRLKWTLDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 129 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.011 | 72 | 132 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-30 | 73 | 130 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-16 | 74 | 130 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-22 | 75 | 130 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-9 | 77 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.6E-13 | 187 | 220 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MYHHQLQHHH QNHRQHQHQH QHQHQHQGKN IIHSSASSSR ISMPNIPSER ILFLQQGDQN 60 SPAGDSGLVL STDAKPRLKW TLDLHERFIE AVNQLGGADK ATPKTVMKLM GIPGLTLYHL 120 KSHLQKYRLS KNLHGGHVTS GPTKIGTGTV PVPVAGESLI SEANGSQMST MSIGIAPQSN 180 KGLHLNETLE MQIEVQRHLQ LRIEAQGKYL QSVLEKAQET LGRQNLGTVG LEAAKVQLSE 240 LVSKVSLNSA FTELKEVQGL CPQKTQTNQQ PTDCSIDSCL TSCEVSRRDQ DQIHSSGMPL 300 RPNYNGRAAA LLEHKEAAQD QRPMLQNTQL NWCDDLKENM FRSPISKDAE KRMFPAATRS 360 SDLSMSIGLQ GENWNIDSKG RDTDGSFLGR TNSRADSAKV EGVKVSQGYR SVPYFAAKLD 420 LNAHDDNDTS SSCRQFDLNG FSWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-19 | 75 | 131 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-19 | 75 | 131 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-19 | 75 | 131 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-19 | 75 | 131 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 74 | 131 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr007679.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM427208 | 9e-32 | AM427208.1 Vitis vinifera contig VV78X026806.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366423.1 | 0.0 | PREDICTED: myb-related protein 2-like isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-119 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A498IHR0 | 0.0 | A0A498IHR0_MALDO; Uncharacterized protein | ||||
STRING | XP_009366423.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-116 | G2-like family protein |
Publications ? help Back to Top | |||
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