PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007675.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 479aa    MW: 53369.3 Da    PI: 6.6768
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007675.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.41.9e-55261651128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdee+++ yL kkv ++++e+  +i e+d++k+ePwdLpk++k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k   
  Pbr007675.1  26 LPPGFRFHPTDEEIITSYLIKKVINSRFEA-AAIGEADLNKCEPWDLPKEAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFNKikk 122
                  79**************************99.88***************99999*****************************************9764 PP

          NAM  96 kgel............vglkktLvfykgrapkgektdWvmheyrl 128
                  +  +            vg+kktLvfy+grapkgekt+Wvmheyrl
  Pbr007675.1 123 Q--QqqggkgagggclVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 165
                  1..2467788888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-6119192IPR003441NAC domain
PROSITE profilePS5100558.2726191IPR003441NAC domain
PfamPF023655.7E-2927165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SRFEAAAIGE  60
ADLNKCEPWD LPKEAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIFNKI  120
KKQQQQGGKG AGGGCLVGMK KTLVFYRGRA PKGEKTNWVM HEYRLDGKIP PYNNLSKAAK  180
DEWVVCRVFH KNMGLKKTLS PTRMNSFGNI GDHDLLDCSS LPPLMDPTLD TSNIMTNKHS  240
SGHGDNDFKP DPIITVAPPS DHHGISTNSY LNYFSVGGGG GVQALKQSYN FQLHPTSNYD  300
SHQASSLSNP SNMLYPAPLY HYHQHHQFQN PSSFSNFQPN QMMSNSDYFQ QGMMRGAQGQ  360
GSVFRTSIST SSDHDDDDQA IPRAIAKDNN KNKMKNNIET SSSGLGGGSD RQCKVEQFST  420
NQSMFSLSQD TELSTDMNTN EISSSFVSKQ ELGSTNNSSY DQDPSVVPLS DIEDLWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-512619717171NO APICAL MERISTEM PROTEIN
1ut4_B2e-512619717171NO APICAL MERISTEM PROTEIN
1ut7_A2e-512619717171NO APICAL MERISTEM PROTEIN
1ut7_B2e-512619717171NO APICAL MERISTEM PROTEIN
4dul_A2e-512619717171NAC domain-containing protein 19
4dul_B2e-512619717171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126133GGKGAGGG
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007675.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981250.0KF198125.1 Malus hupehensis NAC domain protein (NAC112) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366419.10.0PREDICTED: NAC domain-containing protein 79-like
SwissprotQ9FK441e-106NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A498IFB40.0A0A498IFB4_MALDO; Uncharacterized protein
STRINGXP_009366419.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.13e-98Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]