PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr007461.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 346aa MW: 39393.9 Da PI: 5.5566

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr007461.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68	1.9e-21	43	136	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt++e+ +Lie++r +e+ ++rg+ +p+W+ vs+++r+rg++r p+qC+++w+nl ++kki+++e + ++e++s +++ +++ Pbr007461.1 43 RWTRHETFVLIEGKRVVENVVQRGRrstsalgteNFEPKWDLVSSYCRQRGVSRWPVQCRKRWSNLLVDFKKIRNWEAQIKQEAESFWVMRNDV 136 8*******************98555666666588******************************************99999999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-10	42	132	No hit	No description
PROSITE profile	PS50090	6.423	43	109	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.8E-4	43	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MELESMKHEA ASPRPDQADK QQTPDGTGSL VSEDKTKITR HPRWTRHETF VLIEGKRVVE 60 NVVQRGRRST SALGTENFEP KWDLVSSYCR QRGVSRWPVQ CRKRWSNLLV DFKKIRNWEA 120 QIKQEAESFW VMRNDVRRER RLPGFFDREV YNVLVGREVT AMEACPLALF MPGQTDAKHG 180 DGTEDAAAEE EDEEEGPEKD LNGGGDDMAE DRLSSDFEES GQDETAKKSK NENLMQDSPT 240 KTVTIPMPNS GAIKEKLSLG SKTSGENVYQ EKWKQRRGAT DESEHSNIDQ LIKVLERNSN 300 MLNAQLEAHH INCHFEREQR KEQNNSILVA LGKVTDVLAR IADKL*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MELESMKHEA ASPRPDQADK QQTPDGTGSL VSEDKTKITR HPRWTRHETF VLIEGKRVVE  60
NVVQRGRRST SALGTENFEP KWDLVSSYCR QRGVSRWPVQ CRKRWSNLLV DFKKIRNWEA  120
QIKQEAESFW VMRNDVRRER RLPGFFDREV YNVLVGREVT AMEACPLALF MPGQTDAKHG  180
DGTEDAAAEE EDEEEGPEKD LNGGGDDMAE DRLSSDFEES GQDETAKKSK NENLMQDSPT  240
KTVTIPMPNS GAIKEKLSLG SKTSGENVYQ EKWKQRRGAT DESEHSNIDQ LIKVLERNSN  300
MLNAQLEAHH INCHFEREQR KEQNNSILVA LGKVTDVLAR IADKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr007461.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009350619.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A498I3Y6	0.0	A0A498I3Y6_MALDO; Uncharacterized protein
STRING	XP_009350619.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-72	Trihelix family protein