PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007349.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 330aa    MW: 37976.2 Da    PI: 8.3366
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007349.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind26.71.4e-08228299271
                   HHHHHHHHHC....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS
  HSF_DNA-bind   2 Flkklyeile....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 
                   F+  l+++l     de+++++isw  ++ sf++++  +++k  L +    +n + +++ Ln YgF + ++++ +
   Pbr007349.1 228 FVVDLFSLLTrssaDEDIRSVISWGGDNASFIIHNFPNLHK--LVQKLHGRNRTQWLKDLNDYGFYREQKRTFR 299
                   89999999997777889********999*************..889999999999**********988776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF567841.52E-1915170IPR023214HAD-like domain
Gene3DG3DSA:3.40.50.10003.8E-2416175IPR023214HAD-like domain
PROSITE profilePS5096921.87619173IPR004274FCP1 homology domain
SMARTSM005772.8E-2422159IPR004274FCP1 homology domain
PfamPF030312.5E-1625174IPR004274FCP1 homology domain
Gene3DG3DSA:1.10.10.108.9E-7225313IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.94E-5227301IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-6228317IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLKNEELERV KKLGIKKLLH RKKLHLLVDL DHTLLHSADS GEDCLQSQTD GPQDECKALR  60
PSVRSFLRDA SYMYEMYMYT DGERSDALEK ANLLDPSKEH FGDRVISRDD GAQKHQEGLD  120
IVLGHDNAAV ILANTENGWT NHWQNLILVE RYGPDETKSE GALATVLEAL KEIHRMFFHV  180
IKTLKAEVLK GQHQIVFKEF FTSEVPQAWK VTENLGSCYG VRGRSVRFVV DLFSLLTRSS  240
ADEDIRSVIS WGGDNASFII HNFPNLHKLV QKLHGRNRTQ WLKDLNDYGF YREQKRTFRH  300
RQGLLQRERP DLIPEIRYCG QPGKKRVTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ef1_A1e-1351528177RNA polymerase II subunit A C-terminal domain phosphatase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007349.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505120.11e-128PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1
RefseqXP_018505121.11e-128PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2
TrEMBLA0A251NH632e-67A0A251NH63_PRUPE; Uncharacterized protein
STRINGXP_009366287.10.0(Pyrus x bretschneideri)