PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr007308.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 360aa    MW: 40697.3 Da    PI: 5.5755
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr007308.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.69e-083093412254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Pbr007308.1 309 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 341
                  69*****************************87 PP
2ELK29.12.3e-10262283122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Pbr007308.1 262 ELKHELKQGYKEKIVDIREEIL 283
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1795139IPR005540KNOX1
PfamPF037908.1E-1697136IPR005540KNOX1
SMARTSM012562.1E-22151206IPR005541KNOX2
PfamPF037911.2E-16156205IPR005541KNOX2
SMARTSM011886.1E-4262283IPR005539ELK domain
PROSITE profilePS512139.969262282IPR005539ELK domain
PfamPF037898.0E-7262283IPR005539ELK domain
PROSITE profilePS5007111.693282345IPR001356Homeobox domain
SuperFamilySSF466894.23E-16284347IPR009057Homeodomain-like
SMARTSM003896.5E-11284349IPR001356Homeobox domain
CDDcd000863.98E-11285346No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25289348IPR009057Homeodomain-like
PfamPF059209.5E-18302341IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAFHHHHQQT PHEMAFHSFA EDQPPLSGAL TWLNNAAFRQ QNTSFSGLHD AGRNDDVVIS  60
PSGKSSSCSD RNRRDISGYD GGEEEGEDEL ECESARFKAD IVGHPLYEQL VSAHVSCLRI  120
ATPVDQLPRI DEKLVQSQRV VDNYSALRAN GDVGVMDEKE LDLFMTNYVL LLCSFKEQLQ  180
QHVRVHAMEA VMACWELDQS LQSLTGVSTG EGTGATMSDD DDQVDSDINS YDGSLDGPDT  240
MGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK  300
SWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHTNISST SVLKSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338358RKRNWHTNISSTSVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr007308.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366123.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480001e-159KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A498KJU70.0A0A498KJU7_MALDO; Uncharacterized protein
STRINGXP_009366122.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-151KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]