PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr007294.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 464aa MW: 50484.2 Da PI: 5.3959

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr007294.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.3e-40	125	185	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Pbr007294.2 125 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 185 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	115	182	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	127	183	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	129	183	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	131	167	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MLETKDPAIK LFGKKISLPA DIEDLGFDRP VEKEVEVELE EECEEEEEDA ETEQDSPSQK 60 STESIEQDDG SQPKSEDPTN LETLPGSVVN PKTPSIDEES AQTKTAQTEK EQSTENSEEK 120 TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKACQ RYWTAGGTMR NVPVGAGRRK 180 NKNSASHFRH MTISEALEAA RIDAPNGVHH PALKSNGRVL SFGVDAPICD SMASSLNPAD 240 KKVLNGTRNG LHKSEEQVFP SPCKARDNGD DSSSASSVNV SKPHVQNVNG FSSQIPCLPG 300 VPWPYPWNAA VPPPAFCPPG FPLSFCPAPY WNCGVPGAWN VPWFGPQPAS PSPLSGSNSP 360 TLGKHSRDED ILKPEILEKE EPSRQKNGCV LVPKTLRIDD PSEAAKSSIW ATLGIKNDSI 420 SGGGLFKAFQ SKSDKKKTVS ESSPALRANP AALSRSLNFH ESS*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MLETKDPAIK LFGKKISLPA DIEDLGFDRP VEKEVEVELE EECEEEEEDA ETEQDSPSQK  60
STESIEQDDG SQPKSEDPTN LETLPGSVVN PKTPSIDEES AQTKTAQTEK EQSTENSEEK  120
TLKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKACQ RYWTAGGTMR NVPVGAGRRK  180
NKNSASHFRH MTISEALEAA RIDAPNGVHH PALKSNGRVL SFGVDAPICD SMASSLNPAD  240
KKVLNGTRNG LHKSEEQVFP SPCKARDNGD DSSSASSVNV SKPHVQNVNG FSSQIPCLPG  300
VPWPYPWNAA VPPPAFCPPG FPLSFCPAPY WNCGVPGAWN VPWFGPQPAS PSPLSGSNSP  360
TLGKHSRDED ILKPEILEKE EPSRQKNGCV LVPKTLRIDD PSEAAKSSIW ATLGIKNDSI  420
SGGGLFKAFQ SKSDKKKTVS ESSPALRANP AALSRSLNFH ESS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr007294.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339156.1	0.0	PREDICTED: cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-120	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A498I5N5	0.0	A0A498I5N5_MALDO; Uncharacterized protein
STRING	XP_009339156.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-114	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]